Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G229600.2 | |
| TraesCS2B01G251300.1 | |
| TraesCS2D01G233500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58530.1 | TraesCS2A01G229600.2 | AT1G30860.1 | 21798944 |
| AT5G58530.1 | TraesCS2B01G251300.1 | AT1G30860.1 | 21798944 |
| AT5G58530.1 | TraesCS2D01G233500.1 | AT1G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G349200.1 | Wheat | plastid | 96.81 | 97.98 |
| TraesCS3B01G381400.1 | Wheat | mitochondrion, plastid | 96.02 | 96.79 |
| HORVU3Hr1G087930.1 | Barley | plastid | 91.63 | 92.74 |
| Os01t0829400-01 | Rice | mitochondrion | 85.26 | 83.92 |
| Zm00001d012471_P001 | Maize | cytosol, plastid | 37.85 | 82.61 |
| KXG33640 | Sorghum | mitochondrion | 81.67 | 77.36 |
| Zm00001d043006_P001 | Maize | plastid | 79.68 | 69.2 |
| Os10t0343900-01 | Rice | cytosol | 34.66 | 65.91 |
| GSMUA_Achr5P29410_001 | Banana | mitochondrion | 54.58 | 59.31 |
| GSMUA_Achr5P14280_001 | Banana | plastid | 51.0 | 55.9 |
| GSMUA_Achr4P18760_001 | Banana | plastid | 50.6 | 53.81 |
| TraesCS1D01G294800.1 | Wheat | plastid | 51.79 | 51.79 |
| GSMUA_Achr6P32840_001 | Banana | cytosol | 47.01 | 50.64 |
| HORVU7Hr1G076170.1 | Barley | plastid | 44.22 | 50.0 |
| GSMUA_Achr6P23380_001 | Banana | mitochondrion | 45.82 | 48.94 |
| GSMUA_Achr7P18270_001 | Banana | mitochondrion | 49.8 | 48.08 |
| TraesCS1D01G224200.1 | Wheat | mitochondrion | 42.63 | 46.32 |
| OQU81447 | Sorghum | plastid | 34.66 | 46.03 |
| VIT_06s0004g07040.t01 | Wine grape | cytosol, mitochondrion | 44.22 | 45.12 |
| CDX74801 | Canola | cytosol | 29.48 | 44.31 |
| Bra002640.1-P | Field mustard | cytosol | 20.72 | 44.07 |
| KRG97693 | Soybean | plastid | 39.44 | 43.23 |
| KRH30192 | Soybean | plastid | 39.44 | 42.86 |
| KRH31178 | Soybean | plastid | 39.04 | 42.79 |
| KRH14919 | Soybean | plastid | 41.04 | 42.56 |
| KRG98239 | Soybean | plastid | 39.44 | 41.95 |
| PGSC0003DMT400078241 | Potato | cytosol, plastid | 39.44 | 41.25 |
| PGSC0003DMT400078242 | Potato | cytosol, plastid | 41.43 | 40.94 |
| Solyc06g082180.1.1 | Tomato | cytosol, plastid | 41.04 | 40.55 |
| TraesCS2D01G131300.1 | Wheat | cytosol | 33.47 | 40.38 |
| Bra020363.1-P | Field mustard | cytosol, plastid | 40.24 | 40.08 |
| CDY59509 | Canola | cytosol, plastid | 39.84 | 39.68 |
| CDY32696 | Canola | cytosol, plastid | 38.65 | 38.65 |
| VIT_13s0067g01650.t01 | Wine grape | plastid | 43.82 | 37.41 |
| KRH72724 | Soybean | plastid | 40.64 | 36.3 |
| CDY32794 | Canola | peroxisome | 37.45 | 36.29 |
| AT5G58530.1 | Thale cress | cytosol, plastid | 39.04 | 35.9 |
| CDY18861 | Canola | mitochondrion | 34.66 | 35.37 |
| Bra004972.1-P | Field mustard | mitochondrion | 34.26 | 34.82 |
| KRH17081 | Soybean | plastid | 41.83 | 34.77 |
| CDX74802 | Canola | cytosol, mitochondrion | 33.86 | 34.41 |
| KRH73271 | Soybean | plastid | 40.64 | 33.89 |
| Bra004971.1-P | Field mustard | plastid | 33.07 | 32.81 |
| TraesCS5D01G381700.1 | Wheat | mitochondrion | 32.67 | 25.47 |
| TraesCS2D01G250600.1 | Wheat | mitochondrion | 27.09 | 25.19 |
| TraesCS4D01G286300.1 | Wheat | mitochondrion | 32.27 | 24.85 |
| TraesCS6D01G285000.1 | Wheat | mitochondrion | 36.65 | 24.34 |
| Solyc06g082170.2.1 | Tomato | cytosol, plastid | 38.65 | 23.37 |
| TraesCS1D01G095500.1 | Wheat | cytosol | 28.29 | 23.13 |
| TraesCS3D01G334100.1 | Wheat | plastid | 31.08 | 19.02 |
| TraesCS7D01G186600.1 | Wheat | plastid | 37.05 | 18.49 |
| TraesCS2D01G523500.1 | Wheat | plastid | 33.07 | 18.12 |
| TraesCS3D01G166500.1 | Wheat | cytosol | 27.49 | 17.12 |
| TraesCS2D01G292800.1 | Wheat | mitochondrion | 28.69 | 16.98 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G343100.1 | EnsemblPlantsGene:TraesCS3D01G343100 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0009055 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 | InterPro:Glutaredoxin |
| InterPro:IPR002109 | InterPro:Thioredoxin-like_sf | PANTHER:PTHR10168 | PANTHER:PTHR10168:SF75 | PFAM:PF00462 | PFscan:PS51354 |
| SEG:seg | SUPFAM:SSF52833 | TIGR:cd03031 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr3D:+:455715776..455716816
Molecular Weight (calculated)
26606.9 Da
IEP (calculated)
9.638
GRAVY (calculated)
-0.166
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MWLPWVKTRS SSPTSASPAS TCSSTALAAA SPXLSFNSPS LKDLQALLRS DHAAPSPSPP PPHTAPCSPS AARVFHRVRV AASALRALRT LQAPPVAAEA
101: DRRVVLYYTS LHVVRGTYED CRAARAILRG LRASVDERDL AMDARYLEEL TALLPRARRI TLPQVFVGGR HLGGAEELRR LHESGELRRV VAGAAPLAAC
201: ARCGGERYVL CGSCDGSHKR YSLKGGGGFR TCAGCNENGL VRCPDCSPPA V
101: DRRVVLYYTS LHVVRGTYED CRAARAILRG LRASVDERDL AMDARYLEEL TALLPRARRI TLPQVFVGGR HLGGAEELRR LHESGELRRV VAGAAPLAAC
201: ARCGGERYVL CGSCDGSHKR YSLKGGGGFR TCAGCNENGL VRCPDCSPPA V
001: MWRPWRKSSV KIHDTYSPTT ASFKDIHHLC SDDSPSFPSS PSPSPKTASR VFHRVRAANL ILKSWPTRQS NHLLRADSEP INLSRNQNPE SDSKQSKTKT
101: EPDVRISIPG AEKSIVVYFT SLRVVRPTFE ACKSVTSILH SFPVRIDERD LSMDASFSTE LQRIFGKDQN QNQNQAKTPK LPRVFIGGRY IGGAEEVKQL
201: HEIGELKKLV QELPKIEPGV CEMCGGHRFV PCKDCHGSHK VHTEKLGFRT CLTCNENGLV RCSSCSFPQS PPP
101: EPDVRISIPG AEKSIVVYFT SLRVVRPTFE ACKSVTSILH SFPVRIDERD LSMDASFSTE LQRIFGKDQN QNQNQAKTPK LPRVFIGGRY IGGAEEVKQL
201: HEIGELKKLV QELPKIEPGV CEMCGGHRFV PCKDCHGSHK VHTEKLGFRT CLTCNENGLV RCSSCSFPQS PPP
Arabidopsis Description
At5g58530 [Source:UniProtKB/TrEMBL;Acc:Q9FGG8]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.