Factsheet for TraesCS6D01G285000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G334000.1	Wheat	mitochondrion	96.3	95.29
TraesCS6A01G305800.1	Wheat	mitochondrion	95.5	93.77
HORVU0Hr1G017160.1	Barley	mitochondrion	91.53	91.05
EES05526	Sorghum	mitochondrion	72.49	72.11
Os02t0748800-00	Rice	cytosol, mitochondrion	70.11	71.82
Zm00001d052252_P001	Maize	mitochondrion	67.46	69.29
Zm00001d018058_P001	Maize	plastid	66.4	66.58
CDY00113	Canola	cytosol	16.4	46.62
TraesCS4D01G286300.1	Wheat	mitochondrion	36.24	42.02
TraesCS2D01G131300.1	Wheat	cytosol	22.49	40.87
TraesCS7D01G186600.1	Wheat	plastid	53.17	39.96
TraesCS3D01G343100.1	Wheat	plastid	24.34	36.65
TraesCS2D01G523500.1	Wheat	plastid	43.12	35.59
Bra033062.1-P	Field mustard	cytosol	31.22	35.01
CDY04039	Canola	cytosol	30.95	34.72
CDY70277	Canola	cytosol	30.95	34.72
PGSC0003DMT400017853	Potato	cytosol	29.37	34.37
CDY67051	Canola	cytosol	34.39	34.3
TraesCS1D01G095500.1	Wheat	cytosol	27.78	34.2
TraesCS1D01G224200.1	Wheat	mitochondrion	20.9	34.2
TraesCS3D01G334100.1	Wheat	plastid	37.04	34.15
CDY30281	Canola	cytosol	34.39	33.68
PGSC0003DMT400056766	Potato	cytosol	34.92	33.25
AT5G39865.1	Thale cress	cytosol, mitochondrion	34.13	33.08
TraesCS2D01G250600.1	Wheat	mitochondrion	23.55	32.96
TraesCS1D01G294800.1	Wheat	plastid	21.69	32.67
PGSC0003DMT400003335	Potato	cytosol	35.98	32.46
Bra025638.1-P	Field mustard	cytosol	35.19	32.44
CDY20015	Canola	cytosol	34.66	32.43
Solyc02g067400.1.1	Tomato	cytosol	24.34	32.39
Bra025357.1-P	Field mustard	cytosol	35.19	32.36
CDX86410	Canola	cytosol	35.19	32.36
Solyc02g087850.1.1	Tomato	cytosol, plastid	35.71	32.22
CDX85224	Canola	cytosol	35.19	32.13
VIT_14s0108g00400.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	37.3	31.33
AT3G28850.1	Thale cress	cytosol	35.45	31.31
Bra039044.1-P	Field mustard	cytosol	34.92	31.28
KRH40113	Soybean	cytosol, mitochondrion	36.77	30.35
KRG93517	Soybean	cytosol	34.39	29.75
KRH01158	Soybean	cytosol	36.51	29.74
TraesCS5D01G381700.1	Wheat	mitochondrion	23.02	27.02
TraesCS2D01G292800.1	Wheat	mitochondrion	28.57	25.47
TraesCS3D01G166500.1	Wheat	cytosol	21.96	20.6

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0009055
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	InterPro:Glutaredoxin	InterPro:IPR002109
PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF183	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
EnsemblPlantsGene:TraesCS6D01G285000	EnsemblPlants:TraesCS6D01G285000.1	TIGR:cd03031	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:+:392618865..392620001

Molecular Weight (calculated)

40842.4 Da

IEP (calculated)

7.946

GRAVY (calculated)

-0.587

Length

378 amino acids

Sequence
(BLAST)

001: MGCTGSRHAL RGGLRKSFGR SRSGPAAAGA AHHTVALKSS TLGSLSLDRD EEMMKWRADS FAGAAKSKAA TPAPPPQPQL ARRQRQVVGT PTKTPVREPE
101: VINVWELMEG LDDNKNGDRD AAEDERREQS PPGSPESDPE VISEFRKALG EASPPRDYQG DGECVKKREI QRFPGIVRAR VSAFQQRIDA KLAKLARPPT
201: PTSPPPSPSP PPQPQLPPPP DSRRKVVLYL TSLRGIRKTF EDCWATKSIL HGYGVRIDER DLSLHGGFKD ELHASLGSAG RLPQVFVDGE HLGGAEDVRR
301: LHEAGELSRA LEACEMAPPS VGGKGAALEA CSGCGGVRFV PCEECSGSCK VFLEELDSFR RCADCNENGL VRCPLCCL

Best Arabidopsis Sequence Match ( AT2G41330.1 )
(BLAST)

001: MGSSVSKTAS SASASSITSI LNSPPETEFN IPSSSVPKAF TFPMPSIHHP PAKKGDTHHF VSLTSTTYGS LVLDDRQTLP HISVSGKSNK KMPETEEARD
101: SFSPDSVINT WELMNDLDDE FDSANSDTSK SNSVVNLDSF SKPITNRDVV INGSAYGSYE DEEDWRLLPF KPKQPLWKHM SEESFLSDLD PNIISSYKRA
201: LSSKQLGKNS SNGHSNHSVL VSLPEYVSSS PLSSQTSEKD QEKPRLLEKE DNENKIVVYF TSLRGIRKTY EDCCCVRAIL RGFQVAVEER DISMDSKYRK
301: ELQNALGEEK PVCLPQVFIR GVRIGGIEEI KILNDGGELA EMLKDFPACE SIGACDSCGD ARFVPCTNCG GSTKVFEEQE DGFKRCNGCN ENGLVRCNKC
401: CL

Arabidopsis Description

At2g41330/F13H10.12 [Source:UniProtKB/TrEMBL;Acc:Q9ZVB8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.