Factsheet for VIT_14s0108g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
extracellular 1
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00113	Canola	cytosol	17.56	59.4
CDY67051	Canola	cytosol	48.44	57.52
CDY30281	Canola	cytosol	48.89	56.99
KRH40113	Soybean	cytosol, mitochondrion	56.89	55.9
CDY04039	Canola	cytosol	41.56	55.49
PGSC0003DMT400017853	Potato	cytosol	39.78	55.42
KRH01158	Soybean	cytosol	56.67	54.96
Bra033062.1-P	Field mustard	cytosol	41.11	54.9
CDY70277	Canola	cytosol	41.11	54.9
AT5G39865.1	Thale cress	cytosol, mitochondrion	47.11	54.36
Bra025638.1-P	Field mustard	cytosol	49.11	53.9
PGSC0003DMT400003335	Potato	cytosol	50.0	53.7
Zm00001d026424_P001	Maize	cytosol	14.89	53.6
CDX86410	Canola	cytosol	48.89	53.53
Bra025357.1-P	Field mustard	cytosol	48.89	53.53
AT3G28850.1	Thale cress	cytosol	50.67	53.27
Solyc02g087850.1.1	Tomato	cytosol, plastid	49.56	53.22
PGSC0003DMT400056766	Potato	cytosol	46.67	52.9
CDX85224	Canola	cytosol	48.44	52.66
CDY20015	Canola	cytosol	46.44	51.73
Bra039044.1-P	Field mustard	cytosol	48.22	51.42
Solyc02g067400.1.1	Tomato	cytosol	31.56	50.0
KRG93517	Soybean	cytosol	47.78	49.2
GSMUA_Achr3P01620_001	Banana	mitochondrion	34.89	44.48
Zm00001d027853_P001	Maize	plastid	30.22	41.72
EER95421	Sorghum	mitochondrion, plastid	30.67	41.07
GSMUA_Achr8P24180_001	Banana	cytosol	31.78	40.97
Os03t0170800-00	Rice	mitochondrion	29.11	40.68
VIT_08s0032g01030.t01	Wine grape	cytosol	16.22	39.89
GSMUA_Achr4P00540_001	Banana	mitochondrion	34.22	39.19
HORVU4Hr1G075190.2	Barley	mitochondrion	28.22	38.84
TraesCS4D01G286300.1	Wheat	mitochondrion	28.0	38.65
TraesCS4A01G016500.1	Wheat	mitochondrion	28.22	38.48
VIT_08s0007g05530.t01	Wine grape	cytosol	20.89	38.37
VIT_06s0004g07040.t01	Wine grape	cytosol, mitochondrion	20.89	38.21
TraesCS4B01G287700.1	Wheat	mitochondrion	27.78	38.11
Os02t0748800-00	Rice	cytosol, mitochondrion	30.89	37.67
HORVU0Hr1G017160.1	Barley	mitochondrion	31.78	37.63
EES05526	Sorghum	mitochondrion	31.78	37.63
Zm00001d052252_P001	Maize	mitochondrion	30.67	37.5
TraesCS6B01G334000.1	Wheat	mitochondrion	31.78	37.43
TraesCS6D01G285000.1	Wheat	mitochondrion	31.33	37.3
Zm00001d018058_P001	Maize	plastid	30.89	36.87
TraesCS6A01G305800.1	Wheat	mitochondrion	31.11	36.36
VIT_02s0025g02700.t01	Wine grape	cytosol	24.44	35.6
Zm00001d002123_P001	Maize	plastid	32.89	34.91
VIT_13s0019g00340.t01	Wine grape	plastid	20.22	33.96
GSMUA_Achr7P20960_001	Banana	mitochondrion, nucleus	30.22	33.66
Os06t0226100-00	Rice	plastid	28.44	33.42
Os04t0641300-01	Rice	cytosol, plastid	32.0	32.51
Zm00001d037218_P001	Maize	plastid	30.89	32.48
HORVU7Hr1G038000.2	Barley	cytosol, plastid	30.0	31.91
VIT_13s0067g01650.t01	Wine grape	plastid	20.67	31.63
Zm00001d024469_P001	Maize	cytosol, plastid	25.56	31.34
TraesCS2D01G523500.1	Wheat	plastid	31.11	30.57
TraesCS7A01G185200.1	Wheat	mitochondrion, plastid	30.89	30.55
Zm00001d044841_P001	Maize	plastid	29.56	30.43
OQU82428	Sorghum	cytosol, plastid	33.56	30.38
TraesCS2B01G551200.1	Wheat	cytosol, plastid	30.89	30.35
TraesCS2A01G521700.1	Wheat	plastid	30.67	30.13
HORVU2Hr1G115200.2	Barley	cytosol	30.67	29.93
TraesCS7B01G090200.1	Wheat	cytosol, plastid	30.89	29.76
EES14625	Sorghum	cytosol, plastid	26.44	29.38
EER88108	Sorghum	plastid	29.56	29.17
VIT_08s0007g03220.t01	Wine grape	cytosol	25.78	29.15
TraesCS3D01G334100.1	Wheat	plastid	26.0	28.54
TraesCS3B01G372200.1	Wheat	plastid	25.78	28.22
TraesCS7D01G186600.1	Wheat	plastid	31.11	27.83
TraesCS3A01G340600.1	Wheat	plastid	25.11	27.56
VIT_02s0025g01710.t01	Wine grape	cytosol	21.33	25.4
VIT_13s0073g00520.t01	Wine grape	cytosol	20.89	25.0
Os08t0171333-00	Rice	plastid	16.89	24.05

Protein Annotations

EntrezGene:100264446	wikigene:100264446	Gene3D:3.40.30.10	MapMan:35.1	ProteinID:CCB47533	ProteinID:CCB47533.1
UniProt:F6H5R2	EMBL:FN595239	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109
EntrezGene:LOC100264446	wikigene:LOC100264446	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF110
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI00015C9D9E	ArrayExpress:VIT_14s0108g00400	EnsemblPlantsGene:VIT_14s0108g00400	EnsemblPlants:VIT_14s0108g00400.t01
RefSeq:XP_002277734	RefSeq:XP_002277734.1	RefSeq:XP_010661047.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:+:29164816..29166309

Molecular Weight (calculated)

50712.3 Da

IEP (calculated)

5.012

GRAVY (calculated)

-0.782

Length

450 amino acids

Sequence
(BLAST)

001: MGCASSKQPR CRHCQNSFAP VPRSYSMHVH HPPQSKGDSY HVVALTSTTL GTLKLDTSHQ NRNSHVNGTI VEEEEDKENK VNGNENVKAG DKKNKGFSMG
101: LIEAKTWSSM INEKIPKIAP KTPIRTPPGE PETINAWELM EGLEDASPLR SPNHLRSFSF DIDRRSIPAP FELPKSRFQE NGEASPRPMW LNLVDSEMNP
201: NSNSKTAVPE FDPEVISVFR KSLQELPSDD PFHIKDDEKV QAREVMDAKK VNDDEKVQAR EVMDVKKVND DYDFDVLDHK SQSFAKDTVV VYFTSLRGVR
301: KTYEDCCHVR VILKSLGIRL DERDVSMHSG FKEELKDLLG DAFNSGSLPR VFLGRRYIGG AEDVRRMHEE GQLEKTLEDS EKTEAGGNSG SRTCEACGDI
401: RFVPCETCSG SCKIYYEGDE EDDDEEGEFG FQRCPDCNEN GLIRCPICCY

Best Arabidopsis Sequence Match ( AT3G28850.1 )
(BLAST)

001: MGCASSKHRK RCLHCRRGYS PPVDVQRSHS VHHASQNSED SCHMVALSSS SLGSLKLCDS SFGHNHKHLA DFSEKLVSGE SVKTGNGFGP NVVREKSDKE
101: KSNLELQAKL MEAKVWSSMM NEKIPKIVPK TPIVTPPGEP ETINTWEMMD GLEDVLSPLR SPNHVKSFSF DVGPNGGKSN GSVKPVWLQM EEEEEGFEDF
201: DPEIISSFRK SLQELPSDHP FHISNHDFEL KPRFNFSDEE KEEEEQSVGK ERVILYFTSL RGIRKTYEES CDVRVILKSL GIRVDERDVS MHSGFKDELK
301: ELLGEKFNKG VGITLPRVFL GRKYIGGAEE IRKLNEDGKL EKLLGGCERV EENQNGNGLE CEACGDVRFV PCETCSGSCK VYYEYEDDDD DDDEGDDDES
401: VKEEREYGFQ TCPDCNENGL IRCPVCCD

Arabidopsis Description

Uncharacterized protein At3g28850 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH89]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.