CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027853_P001	Maize	plastid	87.2	89.88
TraesCS4D01G286300.1	Wheat	mitochondrion	75.89	78.22
HORVU4Hr1G075190.2	Barley	mitochondrion	75.6	77.68
Os03t0170800-00	Rice	mitochondrion	74.4	77.64
TraesCS4B01G287700.1	Wheat	mitochondrion	75.3	77.13
TraesCS4A01G016500.1	Wheat	mitochondrion	75.6	76.97
GSMUA_Achr3P01620_001	Banana	mitochondrion	49.7	47.31
CDY00113	Canola	cytosol	18.15	45.86
EER94843	Sorghum	cytosol	26.49	43.84
PGSC0003DMT400017853	Potato	cytosol	35.71	37.15
KXG36862	Sorghum	cytosol	23.51	37.09
Bra033062.1-P	Field mustard	cytosol	36.31	36.2
CDY70277	Canola	cytosol	36.31	36.2
CDY04039	Canola	cytosol	35.71	35.61
CDY67051	Canola	cytosol	39.88	35.36
EES05526	Sorghum	mitochondrion	39.88	35.26
CDY30281	Canola	cytosol	40.48	35.23
EES18035	Sorghum	mitochondrion	24.4	34.17
Bra025638.1-P	Field mustard	cytosol	41.37	33.9
AT5G39865.1	Thale cress	cytosol, mitochondrion	38.99	33.59
EES19677	Sorghum	plastid	25.89	32.95
PGSC0003DMT400056766	Potato	cytosol	38.39	32.49
EER95886	Sorghum	mitochondrion	26.49	32.48
Solyc02g067400.1.1	Tomato	cytosol	27.08	32.04
Solyc02g087850.1.1	Tomato	cytosol, plastid	39.88	31.98
PGSC0003DMT400003335	Potato	cytosol	39.88	31.98
EER88108	Sorghum	plastid	43.15	31.8
KRH40113	Soybean	cytosol, mitochondrion	42.56	31.22
KXG33640	Sorghum	mitochondrion	24.4	30.94
KRG93517	Soybean	cytosol	40.18	30.89
AT3G28850.1	Thale cress	cytosol	39.29	30.84
KRH01158	Soybean	cytosol	42.56	30.82
KXG29248	Sorghum	cytosol	30.06	30.7
CDY20015	Canola	cytosol	36.9	30.69
VIT_14s0108g00400.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	41.07	30.67
Bra025357.1-P	Field mustard	cytosol	37.5	30.66
CDX86410	Canola	cytosol	37.5	30.66
Bra039044.1-P	Field mustard	cytosol	38.39	30.57
CDX85224	Canola	cytosol	37.2	30.19
OQU82428	Sorghum	cytosol, plastid	44.64	30.18
EES14625	Sorghum	cytosol, plastid	35.71	29.63
OQU81447	Sorghum	plastid	16.37	29.1
EER91159	Sorghum	mitochondrion	25.89	24.44
EES10743	Sorghum	cytosol	30.06	22.39
KXG31460	Sorghum	cytosol	22.32	18.75

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	EntrezGene:8082114	UniProt:C5WVY1	EnsemblPlants:EER95421	ProteinID:EER95421
ProteinID:EER95421.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109	PFAM:PF00462
PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF130	EnsemblPlantsGene:SORBI_3001G488800	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI0001A82F00	RefSeq:XP_002468423.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:75898342..75899352

Molecular Weight (calculated)

35548.3 Da

IEP (calculated)

5.281

GRAVY (calculated)

-0.214

Length

336 amino acids

Sequence
(BLAST)

001: MGCTTSRQAR HDLRYCPSPL GALPRSQSFP ARCPSDVGVH VVRLTSSTLG SLELEKALPR APEPAAARAT TRLAPRTPTM TPPNEPEDID AWALMAGLED
101: HSPLLAAPFG RHSFSFPVAT VPQDLTASAK VTPLPMPRPD AALVTGGEGK PAPPPVPPRR AVLYFTSLRG VRATYEDCCL ARAILKGYGV RLDERDVSMH
201: RGFRDELRGL LDLGGGPLAK CRAPATPAAL PSLFVDGELV GNAEELKRLH ETGELAARLA GCESAAATGA HGEAGACEAC GDVRFVLCEV CSGSCKVYVD
301: DEDEPEEEGD ECGGGGFRRC TECNENGIVR CPVCCC

Best Arabidopsis Sequence Match ( AT5G39865.1 )
(BLAST)

001: MGCASSKNRN RCRNCKGGLS PVIVPRSYSM HVHHPAQHTG DSYHTVALTS STIGSLSLCD SSLRHFHKHL EDSFYKQRVS DQMGEETLIS GNGFLHGDEE
101: KMNLDLQAKV IEAKVWSSTI NEKIPKIVAK TPIVTPPGEP ETINTWELME GLEDVSPLRS PNHLRSFSFD FVRIQPSHDH DHDVAVSFDL PKSRFHENVK
201: SSCRVDDLDP PDIVSRFKRK TLGKERVVLY FTSLRGIRKT YEDCCNIRII LKSLGIRIDE RDVSMHSGFK DELKKLLEGK FNNGVGITLP RVFLGNKYLG
301: GVEEIKKLNE NGELEKLIKD CEMVEDGSPG FGNECEACGD VRFVPCETCS GSCKLYHEGE EEDEGVTEYG FQRCPYCNEN GLIRCHVCCE

Arabidopsis Description

Uncharacterized protein At5g39865 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLE8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.