CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039270_P001	Maize	cytosol	83.75	84.38
Os01t0235900-00	Rice	plasma membrane	66.75	68.29
TraesCS3B01G189800.1	Wheat	cytosol	65.25	64.29
TraesCS3D01G166500.1	Wheat	cytosol	64.75	64.27
HORVU3Hr1G057240.1	Barley	cytosol	65.25	63.97
TraesCS3A01G158800.1	Wheat	cytosol	63.75	62.96
GSMUA_Achr10P...	Banana	cytosol	50.5	54.3
KRH60067	Soybean	cytosol	33.0	39.17
VIT_02s0025g01710.t01	Wine grape	cytosol	37.0	39.15
Bra040917.1-P	Field mustard	cytosol	34.25	38.06
CDY47842	Canola	cytosol	34.25	38.06
CDY62024	Canola	cytosol	34.25	38.06
AT1G64500.1	Thale cress	cytosol	32.75	35.6
Solyc08g082590.2.1	Tomato	cytosol	34.75	35.37
PGSC0003DMT400031969	Potato	cytosol	33.5	34.27
EER94843	Sorghum	cytosol	17.25	33.99
EER95886	Sorghum	mitochondrion	21.75	31.75
KXG36862	Sorghum	cytosol	16.5	30.99
EES18035	Sorghum	mitochondrion	16.75	27.92
EER91159	Sorghum	mitochondrion	23.5	26.4
EES19677	Sorghum	plastid	17.0	25.76
KXG29248	Sorghum	cytosol	21.0	25.53
KXG33640	Sorghum	mitochondrion	16.25	24.53
OQU81447	Sorghum	plastid	10.75	22.75
EER95421	Sorghum	mitochondrion, plastid	18.75	22.32
EES10743	Sorghum	cytosol	25.0	22.17
EES05526	Sorghum	mitochondrion	20.0	21.05
EES14625	Sorghum	cytosol, plastid	19.5	19.26
EER88108	Sorghum	plastid	20.75	18.2
OQU82428	Sorghum	cytosol, plastid	20.0	16.1

Protein Annotations

MapMan:20.5.4	Gene3D:3.40.30.10	UniProt:A0A1B6Q0Q0	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005884	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009902	GO:GO:0009987	GO:GO:0015035	GO:GO:0016043
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0051017	GO:GO:0055114	InterPro:Glutaredoxin
InterPro:IPR002109	EnsemblPlants:KXG31460	ProteinID:KXG31460	ProteinID:KXG31460.2	PFscan:PS51354	PANTHER:PTHR10168
PANTHER:PTHR10168:SF196	EnsemblPlantsGene:SORBI_3003G004200	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0009DC8DF3	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:413406..414932

Molecular Weight (calculated)

42537.0 Da

IEP (calculated)

4.782

GRAVY (calculated)

-0.651

Length

400 amino acids

Sequence
(BLAST)

001: MGCASSKAGD DVAVADVYRP PPTSVSLFDI TAVEEPWLIA KQSKAADDDD DDEDEETTTD DEEEDDDEKL QPAAKTVVPL PLLDKLEGYE LAPASWSEVS
101: KALEDMKPVL DSKPPPAPVA LKKKKKNKTK KKKKKQQQPQ QPTTTTTTAA PPPVVPAATD GDATGKKAPS PSSLGDLPDI SSSKPAPPEL AGRRVVKDNP
201: FLMRDRESKG DGSTVAPRWK RRDPFEGCPE RRPPGATGGG VVLYTTTLRG DCERTREAVE ACAAAAGVAA VDERDVSLHG EYLRELRELV PAGDGEGEGA
301: AAAPPRLFVM GRYVGGADEC ERLAESGKLR EMMRWVKARG EACAAKDGRG CEGCGGARFV PCWECGGSCK VVAADGGTPT TTERCGKCNE NGLMMCPICH

Best Arabidopsis Sequence Match ( AT1G64500.1 )
(BLAST)

001: MGCTSSKQAK ANVVADVYKP PPSSFAVFDV NAIQEPWLKF EHEDDEKPPR STVFDRLDED DDDDDDDGDD APKTWEEVSK SLETKLKPAA VKPPEVDSVK
101: PPATPPRRLP RKSASFHTLD ELEVRAKRSI AAQIPTTMVK LKRTESMSKL RPESDDRTES TQSSYSGPRS VKENIFVKRD RERREKEGNK KPVMNWDPLR
201: EFPEKCPPGG GEGLIVYTTS LQGVRRTYED CMRVRAIMEQ QGVVVDERDV SLDAGVLSEL KELLQDEASV APPRVFVKGR YLGGAAEVTA MNENGKLGRV
301: LRWARVERVG EEGRLTCEGC GGARWLPCFE CGGSCKVAAV GAAKGERWER CVKCNENGLI RCPVCFVN

Arabidopsis Description

F1N19.7 [Source:UniProtKB/TrEMBL;Acc:Q9SGW5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.