CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99396

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58530.1	EER99396	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0829400-01	Rice	mitochondrion	83.02	86.27
Zm00001d043006_P001	Maize	plastid	90.94	83.39
TraesCS3A01G349200.1	Wheat	plastid	77.36	82.66
TraesCS3D01G343100.1	Wheat	plastid	77.36	81.67
TraesCS3B01G381400.1	Wheat	mitochondrion, plastid	76.23	81.12
HORVU3Hr1G087930.1	Barley	plastid	75.85	81.05
Os10t0343900-01	Rice	cytosol	33.58	67.42
EES19677	Sorghum	plastid	66.04	66.29
GSMUA_Achr5P29410_001	Banana	mitochondrion	52.08	59.74
GSMUA_Achr5P14280_001	Banana	plastid	50.94	58.95
GSMUA_Achr4P18760_001	Banana	plastid	49.81	55.93
EES18035	Sorghum	mitochondrion	48.3	53.33
GSMUA_Achr6P32840_001	Banana	cytosol	46.04	52.36
GSMUA_Achr7P18270_001	Banana	mitochondrion	49.43	50.38
GSMUA_Achr6P23380_001	Banana	mitochondrion	43.77	49.36
VIT_06s0004g07040.t01	Wine grape	cytosol, mitochondrion	42.26	45.53
CDX74801	Canola	cytosol	28.3	44.91
KRH30192	Soybean	plastid	38.49	44.16
HORVU7Hr1G076170.1	Barley	plastid	36.98	44.14
Bra002640.1-P	Field mustard	cytosol	19.62	44.07
OQU81447	Sorghum	plastid	31.32	43.92
KRH14919	Soybean	plastid	40.0	43.8
KRG98239	Soybean	plastid	38.87	43.64
KRH31178	Soybean	plastid	37.36	43.23
EER94843	Sorghum	cytosol	32.83	42.86
KRG97693	Soybean	plastid	36.98	42.79
PGSC0003DMT400078241	Potato	cytosol, plastid	37.74	41.67
Solyc06g082180.1.1	Tomato	cytosol, plastid	39.25	40.94
PGSC0003DMT400078242	Potato	cytosol, plastid	39.25	40.94
Bra020363.1-P	Field mustard	cytosol, plastid	38.11	40.08
CDY59509	Canola	cytosol, plastid	38.11	40.08
CDY32696	Canola	cytosol, plastid	36.98	39.04
KXG36862	Sorghum	cytosol	30.19	37.56
CDY32794	Canola	peroxisome	36.6	37.45
VIT_13s0067g01650.t01	Wine grape	plastid	40.75	36.73
KRH72724	Soybean	plastid	38.87	36.65
CDY18861	Canola	mitochondrion	33.58	36.18
AT5G58530.1	Thale cress	cytosol, plastid	36.98	35.9
Bra004972.1-P	Field mustard	mitochondrion	33.21	35.63
CDX74802	Canola	cytosol, mitochondrion	32.83	35.22
KRH73271	Soybean	plastid	39.62	34.88
KRH17081	Soybean	plastid	39.25	34.44
Bra004971.1-P	Field mustard	plastid	32.08	33.6
EER95421	Sorghum	mitochondrion, plastid	30.94	24.4
EER95886	Sorghum	mitochondrion	24.91	24.09
EES05526	Sorghum	mitochondrion	33.58	23.42
Solyc06g082170.2.1	Tomato	cytosol, plastid	36.6	23.37
EER91159	Sorghum	mitochondrion	29.43	21.91
EES14625	Sorghum	cytosol, plastid	32.08	20.99
KXG29248	Sorghum	cytosol	26.04	20.97
EER88108	Sorghum	plastid	34.34	19.96
OQU82428	Sorghum	cytosol, plastid	32.45	17.3
EES10743	Sorghum	cytosol	28.68	16.85
KXG31460	Sorghum	cytosol	24.53	16.25

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	UniProt:A0A1B6Q6V2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin
InterPro:IPR002109	EnsemblPlants:KXG33640	ProteinID:KXG33640	ProteinID:KXG33640.1	PFAM:PF00462	PFscan:PS51354
PANTHER:PTHR10168	PANTHER:PTHR10168:SF75	EnsemblPlantsGene:SORBI_3003G342900	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI00081AB49D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:66509511..66511995

Molecular Weight (calculated)

27706.1 Da

IEP (calculated)

9.895

GRAVY (calculated)

-0.068

Length

265 amino acids

Sequence
(BLAST)

001: MWLPWVKTRP SSASPSSATS TSSSSTALIA AASPRLSFSS PSLKDLQALL LSDAATPSPP PAAPCSPSSS VRVFHRVRVA ASALRALRTL QAPPSAADGG
101: GGGGASEADR RVVLYFTSLH VVRSTYEDCR AVRAILRGLR VAVDERDLAM DPRYLQELAA LLPRLASPRR VTLPQVFVGG RHLGGADEVR RLHEAGELRR
201: VVAGAVAASS LAVCGRCGGE RYVLCGSCNG SHKRYSVKGG GGFRTCAGCN ENGLVRCPDC SPPDV

Best Arabidopsis Sequence Match ( AT5G58530.1 )
(BLAST)

001: MWRPWRKSSV KIHDTYSPTT ASFKDIHHLC SDDSPSFPSS PSPSPKTASR VFHRVRAANL ILKSWPTRQS NHLLRADSEP INLSRNQNPE SDSKQSKTKT
101: EPDVRISIPG AEKSIVVYFT SLRVVRPTFE ACKSVTSILH SFPVRIDERD LSMDASFSTE LQRIFGKDQN QNQNQAKTPK LPRVFIGGRY IGGAEEVKQL
201: HEIGELKKLV QELPKIEPGV CEMCGGHRFV PCKDCHGSHK VHTEKLGFRT CLTCNENGLV RCSSCSFPQS PPP

Arabidopsis Description

At5g58530 [Source:UniProtKB/TrEMBL;Acc:Q9FGG8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.