CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90511
EER90564
EER97037
EER97813
EES01810
EES02002
EES02004
EES03779
EES08028
EES11990
EES15997
EES19603
KXG21029
KXG21030
KXG23031
KXG24783
KXG27000
KXG27062
KXG30263
KXG34025
OQU75620
OQU75637
OQU79022
OQU80131
OQU80698
OQU92552

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30860.1	EER90511	AT1G01630.1	21798944
AT1G30860.1	EES02002	AT1G01630.1	21798944
AT1G30860.1	EES02004	AT1G01630.1	21798944
AT1G30860.1	EES15997	AT1G09770.1	21798944
AT1G30860.1	KXG34025	AT1G09770.1	21798944
AT1G30860.1	OQU92552	AT1G61590.1	21798944
AT1G30860.1	KXG24783	AT2G01250.1	21798944
AT1G30860.1	KXG27000	AT2G01250.1	21798944
AT1G30860.1	KXG27062	AT2G01250.1	21798944
AT1G30860.1	OQU75620	AT2G01250.1	21798944
AT1G30860.1	OQU75637	AT2G01250.1	21798944
AT1G30860.1	OQU80131	AT2G01250.1	21798944
AT1G30860.1	EER97813	AT2G39760.1	21798944
AT1G30860.1	EER97037	AT2G43370.1	21798944
AT1G30860.1	OQU79022	AT3G01690.1	21798944
AT1G30860.1	EES11990	AT3G11590.1	21798944
AT1G30860.1	KXG30263	AT3G11590.1	21798944
AT1G30860.1	EES03779	AT3G60360.1	21798944
AT1G30860.1	EER90564	AT5G09810.1	21798944
AT1G30860.1	EES01810	AT5G09810.1	21798944
AT1G30860.1	EES08028	AT5G09810.1	21798944
AT1G30860.1	EES19603	AT5G09810.1	21798944
AT1G30860.1	KXG21029	AT5G09810.1	21798944
AT1G30860.1	KXG21030	AT5G09810.1	21798944
AT1G30860.1	KXG23031	AT5G09810.1	21798944
AT1G30860.1	EES11990	AT5G22310.1	21798944
AT1G30860.1	KXG30263	AT5G22310.1	21798944
AT1G30860.1	OQU80698	AT5G22890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021532_P001	Maize	cytosol, plastid	75.78	75.68
Zm00001d006417_P002	Maize	plastid	47.54	62.52
TraesCS2A01G229600.2	Wheat	nucleus, plastid	52.72	55.07
TraesCS2D01G233500.1	Wheat	cytosol, plastid	52.33	53.37
TraesCS2B01G251300.1	Wheat	nucleus, plastid	50.39	53.0
HORVU2Hr1G048520.1	Barley	plastid	41.84	50.23
Os07t0499800-01	Rice	nucleus	47.28	48.54
GSMUA_Achr4P33210_001	Banana	nucleus	22.02	31.31
GSMUA_Achr7P00390_001	Banana	nucleus	25.52	27.1
VIT_01s0010g00340.t01	Wine grape	nucleus	20.08	21.26
CDY31650	Canola	nucleus, plastid	17.23	20.65
Bra005381.1-P	Field mustard	nucleus	16.71	19.91
AT2G34920.2	Thale cress	nucleus	15.93	18.47
CDX84276	Canola	endoplasmic reticulum, extracellular	16.06	18.32
Bra039871.1-P	Field mustard	nucleus	15.93	17.52
CDY52188	Canola	nucleus	15.54	17.52
AT1G30860.1	Thale cress	cytosol	16.45	17.4
CDY12454	Canola	nucleus	14.25	17.05
KRH12155	Soybean	nucleus	20.21	17.01
KRH37161	Soybean	nucleus	20.21	16.92
CDY09519	Canola	nucleus	15.54	16.74
Bra021939.1-P	Field mustard	nucleus, plastid	13.47	16.69
Bra023148.1-P	Field mustard	nucleus	15.16	16.6
CDY02344	Canola	cytosol	14.77	16.57
CDX96975	Canola	cytosol	14.51	16.3
PGSC0003DMT400035458	Potato	nucleus	20.34	15.17
Solyc10g005220.2.1	Tomato	nucleus, plastid	17.75	14.54
Solyc02g082100.2.1	Tomato	vacuole	19.82	14.19
PGSC0003DMT400029374	Potato	nucleus, plastid	18.01	14.1
CDY14941	Canola	nucleus	9.33	11.59
AT5G44690.1	Thale cress	nucleus	9.72	11.33
CDY50063	Canola	cytosol	15.41	10.83
CDX78978	Canola	cytosol	15.54	10.6
AT4G20160.2	Thale cress	cytosol	15.67	9.98
Bra013447.1-P	Field mustard	nucleus	15.67	9.79
EES06049	Sorghum	nucleus	9.33	9.44
OQU93435	Sorghum	nucleus	7.77	9.19
KXG35138	Sorghum	nucleus	8.29	9.14

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	UniProt:C5X962	EnsemblPlants:EER99396	ProteinID:EER99396	ProteinID:EER99396.2
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0016740
GO:GO:0043231	GO:GO:0080043	GO:GO:0080044	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR42647	PANTHER:PTHR42647:SF11	EnsemblPlantsGene:SORBI_3002G307800	SUPFAM:SSF57850	unigene:Sbi.7948
UniParc:UPI00081AC7F6	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:68198692..68204108

Molecular Weight (calculated)

85042.7 Da

IEP (calculated)

6.373

GRAVY (calculated)

-0.695

Length

772 amino acids

Sequence
(BLAST)

001: MASSVAAMPH ESASWRDPSR PTPSRGFFNI LVSTSSPDAA AAGGSASSSS SASEPTPRRR RQILDRWAAA AAAVTASAAP EPADQPRRAR DAELSELASA
101: TRPVTARAAV FREPSPAPSD ASSTAANAAF AAAGATSAPS ELPPAGPRAS SLIQRWREIE AIGPVTPRPG TAAADPGAAS ASDSDTGSPR GRVGCIVKKL
201: SGASSLPEEE LDEVAKSELS FSQSAPPSPA RMRDASSQCA YPYPYPTGAI NCPRPPHLVV RTVRGRRAME ELVAAMAHRR RREVAALAER HAVSRFAHKG
301: RIQSMLRLRL LRQRGTVEDE LWSQLKPVRP HQPKHVGELS GCRYDSRDTN LREANNYSQQ NNGKCRPDEH FCNDRVPAEE KSTDVSAEGL VDGSGNLQCD
401: EQMKTKGDTS QKDCKNFCVH SQNYSEASNF ARYGEHSTID ENQFVEDISP STTSTLHELE TPSSRGDNLR EEDNQSINGS WEERGLWISS LGWPAPIDTM
501: SPDSWHQDTM GDIENHNNQI QFNDRPWIDS PNSWRSLCVV TQSDYRALSR NADICNLLES KKVSKSLESD FSNKMNQLLL TALQKQRQQQ MMDDFGGYYD
601: ERMYWRQNDE IHDADKEASA PCSLAPVSHL GAHQQESWQH SSFGSQHHDN QNLLEMEVRV RGEMSQIHHE IYELRKLVES CIASQVKMQH SIKEEVCSAL
701: REAGLMPSQP DTTAAKRGDC CICHRMQVDS LLYRCGHVCT CFDCADQLKM SGRSCPICQS PIDDVVRAQL NF

Best Arabidopsis Sequence Match ( AT4G20160.3 )
(BLAST)

0001: MASSEVEMSS CQTFNCVLSR PHERCTQRDN NTNNNKKKNN NNNNVRNIHV AAFEKNLNVF VRDHLENCSV SVDDVVDDSI KAVPECSSNK SSVSDHRLSK
0101: TEESRQDVPS SSSSLGSDSD PNSGQPENPS RNAASSLVQI WEARTTQQPP SSNQSLIDSR TSSMGSNALE NSESLESVKE SQMIQPIEEC NNEEEEEEIE
0201: CAPPPLESGE KDREGVRVMD IIRKLSNDSE TITNNDNGSS GNDNSKEVQT TEARSFPQVA CSPRIRGRQA LADLLVQMTR DREKDLACLR ERHCVSKFTN
0301: RGRIQSTLRI RCYERCLAIQ GRHRSKSTSA GSDSNRSSRG SGVMHLLREK YKANSENIET GASTSHASTR GRIMDKDPHK ATEKKVLQET IEKSGVKEIK
0401: EVVSAVENAK KGVLSEISEN RNGLKKLAGE TIQKETVEGK GEKRETKEKV ISKESLEGKG EKRESTKEKA IAKESVAEKA LVGIAEKVNL WNSDEKMNRR
0501: KVVEKGKTEG NTNTERVERN DVLEEATRRI LSVESAERSS TTTSKETMTR CEVAEKVVKG KKKEDFVSLE SNKSKEVEDG NIKPQGVTTQ ADSCLRKPAI
0601: EEKVLQETTV KSDLKKPTEK ESREERREIE EEESTSMGIA EKVNLWNSKE KKNRRKAMEK GKGKTEGKAI TETNELLQEA SRRISNVETA ERSIDTSWIT
0701: VVKVVGDRVI MDKRKSSGET TRSAEIGGGK KEEDLASVEA KSKDVIEDKN MNPQAVIHGS KERDKERNSS QNGEETLSLR NSEAKSTKEI ERQEVTQEEK
0801: SVSHGSREKD KERNSLQYGE KMCFLRNSEA KSTKEIERNK SQEVSQGEES ASHGSRESAK EKNSSQQDDE TSTHRNPNDK KGIKEPEDEE SKKVEREETG
0901: ENVEEASVEF VNDWDGNEME EEEEEEYGDY FNGDDDWIHD ISRPRSYWED LRKERYLEVL NTESEKKDIC NLIERRTVSN FLTSDLRQKI DNLMITRVQS
1001: HIGVPLNQIE EGDEYEEEWE VECSARNEED NETEEEPEKT NLEAPSDVCS QSSARSSTMM SWNFRDQDID KDNEPTTSLS LPEPLVPTNQ STQDMQTISD
1101: LKEQMEQLQR EMLELRNTVK SCIDMQLHFQ KSVTQDLSRS GSSAEQRVDP KKDPLKRKCC VCSEMPVDSL LYRCGHMCTC LKCAHELQWS SKKCPICMAP
1201: IVDVVRAFLD S

Arabidopsis Description

LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily /.../n (TAIR:AT1G30860.1); Has 64917 Blast hits to 39974 proteins in 1949 species: Archae - 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source: NCBI BLink). [Source:TAIR;Acc:AT4G20160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.