Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99396 | Sorghum | plastid | 75.68 | 75.78 |
| Zm00001d006417_P002 | Maize | plastid | 46.18 | 60.82 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 52.52 | 54.94 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 53.3 | 54.43 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 51.49 | 54.22 |
| HORVU2Hr1G048520.1 | Barley | plastid | 41.27 | 49.61 |
| Os07t0499800-01 | Rice | nucleus | 47.61 | 48.94 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 20.18 | 28.73 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 25.36 | 26.96 |
| Zm00001d019766_P001 | Maize | nucleus | 5.43 | 21.0 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 19.53 | 20.71 |
| AT2G34920.2 | Thale cress | nucleus | 15.91 | 18.47 |
| Bra005381.1-P | Field mustard | nucleus | 15.39 | 18.36 |
| CDY31650 | Canola | nucleus, plastid | 15.27 | 18.32 |
| AT1G30860.1 | Thale cress | cytosol | 16.95 | 17.95 |
| CDY52188 | Canola | nucleus | 15.65 | 17.66 |
| KRH37161 | Soybean | nucleus | 20.57 | 17.25 |
| Bra039871.1-P | Field mustard | nucleus | 15.65 | 17.24 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 15.01 | 17.13 |
| Bra023148.1-P | Field mustard | nucleus | 15.27 | 16.74 |
| CDY09519 | Canola | nucleus | 15.52 | 16.74 |
| CDY12454 | Canola | nucleus | 13.84 | 16.59 |
| CDY02344 | Canola | cytosol | 14.75 | 16.57 |
| KRH12155 | Soybean | nucleus | 19.53 | 16.47 |
| Bra021939.1-P | Field mustard | nucleus, plastid | 13.07 | 16.21 |
| CDX96975 | Canola | cytosol | 14.23 | 16.01 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 17.98 | 14.76 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 18.37 | 14.4 |
| PGSC0003DMT400035458 | Potato | nucleus | 19.15 | 14.3 |
| Solyc02g082100.2.1 | Tomato | vacuole | 19.79 | 14.19 |
| CDY14941 | Canola | nucleus | 8.93 | 11.11 |
| AT5G44690.1 | Thale cress | nucleus | 9.44 | 11.03 |
| CDY50063 | Canola | cytosol | 15.65 | 11.01 |
| CDX78978 | Canola | cytosol | 15.52 | 10.6 |
| AT4G20160.2 | Thale cress | cytosol | 15.65 | 9.98 |
| Zm00001d027308_P001 | Maize | nucleus | 8.54 | 9.87 |
| Bra013447.1-P | Field mustard | nucleus | 14.75 | 9.22 |
| Zm00001d051871_P002 | Maize | nucleus | 8.8 | 8.1 |
| Zm00001d019765_P001 | Maize | nucleus | 2.72 | 5.61 |
Protein Annotations
| EnsemblPlants:Zm00001d021532_P001 | EnsemblPlants:Zm00001d021532_T001 | EnsemblPlantsGene:Zm00001d021532 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF11 | PFAM:PF13920 | PFscan:PS50089 |
| ProteinID:ONM57410.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000843CD26 | UniProt:A0A1D6IBW0 | MapMan:35.2 |
Description
RING/U-box superfamily protein
Coordinates
chr7:-:155246635..155252267
Molecular Weight (calculated)
84835.8 Da
IEP (calculated)
6.639
GRAVY (calculated)
-0.662
Length
773 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSVAAMPH ESASWRDPSR PTPSRGFFNI LIPSPEAAAA SSSSASEPTP RRRRQILDRW ATAAAAVTAS APPAPADQRR RARDAELSEL ASATRPVAAR
101: AAVFREPSPA PSDASSTAAP AAPAAAAAAT AAAVATPSEL PPAGPRASSL IQRWRAIEAV GPATPRPGSA ADPATPRPGS AADPASASDS DTGSPRGRVG
201: CIVKKLSGAS SLPEDELDDA AKSELSLSQS APPSPAPTRD ASQYPPYASG AINCPRPPQL VVRTVRGRRA MEELVAAIAH RRRREVAALA ERHAVSRFAH
301: KGRIQSMLRL RLLRQRGTVE DEPWSLLKPV RPHQQKHVGK LRYDSRDTDL QKANNSCQQN NSKCMPDEQL YNDRVPAEEK SNDISAEGLV DGSGNLQCDE
401: QMKAKGDTCQ KDCENFCVHS QHYSEASSFA RYGEHSTIDE NQFVEDISPS TTSTLHELET PSSRGDNLRE EDNQSINGSW EERGLWISSL GWPAPIDTMS
501: PDSWHQETMG DIENHNNPIQ FNDRPWIESP NSWRSLCVVT QSDCHALSHN ADICNLLERK KVSKSLESDF SNKMNQLLLT ALQKQRQQRM MDDFGGYYDE
601: RMYWRQNDEI RDADKEASAP CSLAPVAHLG AHQQESWQHS SFGSQHQHHD NQNLLEMEVR VRGEMSQIHQ EIYQLRKLVE SCIASQVKMQ HSIKEEVCSA
701: LREAGLMRSQ PDTAAAKRGN CCICHRMQVD SLLYRCGHVC TCFDCADQLK SSGMSCPICQ SPIDDVVLAR LNF
101: AAVFREPSPA PSDASSTAAP AAPAAAAAAT AAAVATPSEL PPAGPRASSL IQRWRAIEAV GPATPRPGSA ADPATPRPGS AADPASASDS DTGSPRGRVG
201: CIVKKLSGAS SLPEDELDDA AKSELSLSQS APPSPAPTRD ASQYPPYASG AINCPRPPQL VVRTVRGRRA MEELVAAIAH RRRREVAALA ERHAVSRFAH
301: KGRIQSMLRL RLLRQRGTVE DEPWSLLKPV RPHQQKHVGK LRYDSRDTDL QKANNSCQQN NSKCMPDEQL YNDRVPAEEK SNDISAEGLV DGSGNLQCDE
401: QMKAKGDTCQ KDCENFCVHS QHYSEASSFA RYGEHSTIDE NQFVEDISPS TTSTLHELET PSSRGDNLRE EDNQSINGSW EERGLWISSL GWPAPIDTMS
501: PDSWHQETMG DIENHNNPIQ FNDRPWIESP NSWRSLCVVT QSDCHALSHN ADICNLLERK KVSKSLESDF SNKMNQLLLT ALQKQRQQRM MDDFGGYYDE
601: RMYWRQNDEI RDADKEASAP CSLAPVAHLG AHQQESWQHS SFGSQHQHHD NQNLLEMEVR VRGEMSQIHQ EIYQLRKLVE SCIASQVKMQ HSIKEEVCSA
701: LREAGLMRSQ PDTAAAKRGN CCICHRMQVD SLLYRCGHVC TCFDCADQLK SSGMSCPICQ SPIDDVVLAR LNF
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.