Factsheet for Bra005381.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31650	Canola	nucleus, plastid	88.12	88.66
Bra021939.1-P	Field mustard	nucleus, plastid	43.67	45.43
AT2G34920.2	Thale cress	nucleus	43.67	42.49
Bra023148.1-P	Field mustard	nucleus	39.2	36.03
Bra039871.1-P	Field mustard	nucleus	37.5	34.62
GSMUA_Achr4P33210_001	Banana	nucleus	18.98	22.65
VIT_01s0010g00340.t01	Wine grape	nucleus	25.15	22.36
KRH37161	Soybean	nucleus	28.86	20.28
Solyc10g005220.2.1	Tomato	nucleus, plastid	28.7	19.75
KRH12155	Soybean	nucleus	27.93	19.74
HORVU2Hr1G048520.1	Barley	plastid	17.9	18.04
Os07t0499800-01	Rice	nucleus	20.83	17.95
GSMUA_Achr7P00390_001	Banana	nucleus	19.75	17.61
TraesCS2A01G229600.2	Wheat	nucleus, plastid	19.44	17.05
PGSC0003DMT400029374	Potato	nucleus, plastid	25.93	17.04
TraesCS2D01G233500.1	Wheat	cytosol, plastid	19.75	16.91
TraesCS2B01G251300.1	Wheat	nucleus, plastid	18.98	16.76
EER99396	Sorghum	plastid	19.91	16.71
PGSC0003DMT400035458	Potato	nucleus	26.23	16.43
Bra013447.1-P	Field mustard	nucleus	30.86	16.18
Zm00001d021532_P001	Maize	cytosol, plastid	18.36	15.39
Solyc02g082100.2.1	Tomato	vacuole	25.46	15.31
Zm00001d006417_P002	Maize	plastid	13.27	14.65
Bra029846.1-P	Field mustard	nucleus	9.88	8.28
Bra034121.1-P	Field mustard	nucleus	9.72	7.88
Bra009452.1-P	Field mustard	nucleus	9.88	7.65
Bra011990.1-P	Field mustard	nucleus, plastid	8.95	7.59
Os03t0107500-00	Rice	plasma membrane	2.16	3.84

Protein Annotations

EnsemblPlants:Bra005381.1	EnsemblPlants:Bra005381.1-P	EnsemblPlantsGene:Bra005381	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF103	PFAM:PF13920
PFscan:PS50089	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0002547F30	UniProt:M4CME3	MapMan:35.2

Description

AT2G34920 (E=9e-191) EDA18 | EDA18 (embryo sac development arrest 18); protein binding / zinc ion binding

Coordinates

chrA05:+:5123697..5126188

Molecular Weight (calculated)

73875.5 Da

IEP (calculated)

7.080

GRAVY (calculated)

-0.902

Length

648 amino acids

Sequence
(BLAST)

001: MASSQLEIAS LRSNFGCIIL RDRNQRQNNH DAVFKKKNKS RLGSPEKPRT GKGNNFSDST KRNDKRGGAS SLVQIWEARL NRSSTGNSSP IQEETNLSAP
101: STDGESESEN VSKNNDPTVE VESGALGTVP ESGESKWGRV AEIIRKLKLT AGDNVRAADV LNIKTPKQEK SSFRAVTCSP RLRGRQAFSD LLMRLERDRH
201: RELESLAGRN AVSKFSQRGR LQSMLRLRTL KRGLLIQDRH LSSAETPDLS RFEFGSTVLN LRERFGANAT SEAERKKRQE TTLETERSTE SMKPKDTTIL
301: LETSSAERFS HRNHKIEEAN SRKKETEPKM SYRQLQEALK RKIDNTSPHT IVTLQEPRTP EKEMANIVES RKNGTHETPF LESQETSFVW EYQEEYEDEQ
401: SYYGETSNDW FTEISRPRTY WEDLRKSRYL EVMNTRSDKD DICRLLERRT VSDFLQSELR EKIDKLMMSR VQTHPVQRIE EAGKEEQECD IGQGEDEDDE
501: EVRDDLSHTS SQLFAPSPAG SWSSQDIGVS STPDLSPLHT PQSTEMEIIS ELRSQILQLQ LDMSELRDSV KTCLDVNATL QKSVHRENPL KRKCCVCNAS
601: QVETLLYRCG HMCTCLRCAN ELQCNGGKCP ICRAKILDVV RVFFDSST

Best Arabidopsis Sequence Match ( AT2G34920.2 )
(BLAST)

001: MASLRPSFGS VLRDRNQRHN DDVVFKKNLK AQVKTAPPAI SDESSENRVD SLIGNKRKKN NKSRPGSPEK PRTRKGNNFS DNLGGASSLV QIWEARLNRS
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STEMEIISEM RSHILQLQLE MSELRDSVKT CLDVNASLQK
601: SVHLENPFKR KCCVCNETQV ETLLYRCGHM CTCLRCANEL QYNGGKCPIC HAKILDVVRV FVDSRT

Arabidopsis Description

EDA18RING/U-box superfamily protein [Source:TAIR;Acc:AT2G34920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.