Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g082100.2.1 | Tomato | vacuole | 71.3 | 68.46 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 28.02 | 29.41 |
| AT2G34920.2 | Thale cress | nucleus | 17.2 | 26.73 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 13.91 | 26.52 |
| CDY31650 | Canola | nucleus, plastid | 16.43 | 26.4 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 18.55 | 26.34 |
| Bra005381.1-P | Field mustard | nucleus | 16.43 | 26.23 |
| CDY02344 | Canola | cytosol | 17.2 | 25.87 |
| CDY52188 | Canola | nucleus | 16.71 | 25.26 |
| Bra023148.1-P | Field mustard | nucleus | 17.0 | 24.96 |
| CDY12454 | Canola | nucleus | 15.56 | 24.96 |
| KRH37161 | Soybean | nucleus | 21.64 | 24.3 |
| Bra039871.1-P | Field mustard | nucleus | 16.43 | 24.22 |
| AT1G30860.1 | Thale cress | cytosol | 17.0 | 24.11 |
| Bra021939.1-P | Field mustard | nucleus, plastid | 14.11 | 23.43 |
| CDY09519 | Canola | nucleus | 16.23 | 23.43 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 15.07 | 23.04 |
| KRH12155 | Soybean | nucleus | 20.1 | 22.68 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 14.78 | 21.05 |
| HORVU2Hr1G048520.1 | Barley | plastid | 12.75 | 20.53 |
| EER99396 | Sorghum | plastid | 15.17 | 20.34 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 13.91 | 19.62 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 13.91 | 19.49 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 14.11 | 19.29 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 14.3 | 19.15 |
| CDX96975 | Canola | cytosol | 12.56 | 18.92 |
| Os07t0499800-01 | Rice | nucleus | 13.04 | 17.95 |
| Zm00001d006417_P002 | Maize | plastid | 10.14 | 17.89 |
| CDY50063 | Canola | cytosol | 18.55 | 17.47 |
| CDX78978 | Canola | cytosol | 18.26 | 16.7 |
| AT4G20160.2 | Thale cress | cytosol | 19.03 | 16.24 |
| AT5G44690.1 | Thale cress | nucleus | 10.24 | 16.01 |
| CDY14941 | Canola | nucleus | 9.18 | 15.3 |
| Bra013447.1-P | Field mustard | nucleus | 18.07 | 15.13 |
| PGSC0003DMT400070376 | Potato | nucleus | 7.25 | 8.68 |
| PGSC0003DMT400018447 | Potato | nucleus | 6.18 | 8.39 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 6.67 | 7.99 |
| PGSC0003DMT400043571 | Potato | nucleus | 6.57 | 7.92 |
| Os03t0107500-00 | Rice | plasma membrane | 1.26 | 3.56 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400035458 | EnsemblPlantsGene:PGSC0003DMG401013630 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF103 | PFAM:PF13920 | PFscan:PS50089 | PGSC:PGSC0003DMG401013630 |
| SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0002958D15 | UniProt:M1B2A3 | MapMan:35.2 | : |
Description
Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG401013630]
Coordinates
chr2:+:37861911..37867591
Molecular Weight (calculated)
117215.0 Da
IEP (calculated)
5.672
GRAVY (calculated)
-1.000
Length
1035 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASSQVEIAS SSSFGHVLRD RNRRDRCTHR DSNVFQKNLK DLVHTHIHSC ISSSQPTNTN NSFDSNENSR HHRHVDYADL WVHKPQWDNN ENSPTTVDKW
0101: DRAREMVISS RPSKQREETS SCSLETTTAT TTTAVEVPNS GGVSTLVRRW RDFETVSKSV NSNPSSAKSN CENAAFADLN VLQRGDDTCD ESSSVDGRFE
0201: TPATSVNGES SGDWEQAYKT AMNDIQGCKQ TDTNKEREKL RVADIIRKLA SSNGEENHEN EHNCTNAAPL ATGECLPRIK TSFDHSEQQL QQRNFFPVLH
0301: SPRIIRGRKA LSDLLLQMER DRLRELDTLR ERKAVSKFQQ RGRIQALLKV RFLRRVTDAR DDRSTNGTSS ESNRVSSSAI MHIRERFNTG SQNGVADSRS
0401: LSREAADNTQ ESWSSTLNQQ KVQNCDKENK GSISCHRELA DNTAVKVGSE LASYKQREGN QKREIIRESA AMQPGVADSR SNSSPKSEIA STSTREDHPE
0501: PSDPMTLCIK VIDNNTQIGK VFTSNQLQEE NHHGEVNEKT SPRMMTTNVK ATNSSNPQKE MSIHIRHSDS SCSPKHNEVD CSPQAVRPSL LHCTSQLQSS
0601: DVSHDQASWE NASCQANHDK SLEFLETSRS PKDSEQSVHR EEQDANKLQH AGTSNEWSSE STKPQSDWEE EATNQNLVDS DCGWVSDYSH TPSGWDELQS
0701: NYQQQSESNQ DWINDVSRPR EEWEDLRQER YQEMLDPFLE NHDIRQLLNR KSVSIFLNSG LREKIDQLMA SRSQELPNAK SGQLEKKVGA HMTKEEAKEG
0801: EVLSHIETRA AGCDDDEEEA DSGYEDDFED DNTPIRQQYL KPEELVDQNK ASHTLHSWRN NQDTLPSWSN DQDRGVSDDS YHLPSNSLPQ PQLSNIYSHH
0901: NQQCSSSSTR HPSIEMELIY ELRGHMEQLH QEIFEIRRSI NSCMNMQMNL QHSIKDEVAA AIIQSGPMIG SNSDKKSANI ANCCICYEQQ VDSLLYRCGH
1001: MCTCFRCAHE LLWGTGKCPI CETPIIDVVR AYIHS
0101: DRAREMVISS RPSKQREETS SCSLETTTAT TTTAVEVPNS GGVSTLVRRW RDFETVSKSV NSNPSSAKSN CENAAFADLN VLQRGDDTCD ESSSVDGRFE
0201: TPATSVNGES SGDWEQAYKT AMNDIQGCKQ TDTNKEREKL RVADIIRKLA SSNGEENHEN EHNCTNAAPL ATGECLPRIK TSFDHSEQQL QQRNFFPVLH
0301: SPRIIRGRKA LSDLLLQMER DRLRELDTLR ERKAVSKFQQ RGRIQALLKV RFLRRVTDAR DDRSTNGTSS ESNRVSSSAI MHIRERFNTG SQNGVADSRS
0401: LSREAADNTQ ESWSSTLNQQ KVQNCDKENK GSISCHRELA DNTAVKVGSE LASYKQREGN QKREIIRESA AMQPGVADSR SNSSPKSEIA STSTREDHPE
0501: PSDPMTLCIK VIDNNTQIGK VFTSNQLQEE NHHGEVNEKT SPRMMTTNVK ATNSSNPQKE MSIHIRHSDS SCSPKHNEVD CSPQAVRPSL LHCTSQLQSS
0601: DVSHDQASWE NASCQANHDK SLEFLETSRS PKDSEQSVHR EEQDANKLQH AGTSNEWSSE STKPQSDWEE EATNQNLVDS DCGWVSDYSH TPSGWDELQS
0701: NYQQQSESNQ DWINDVSRPR EEWEDLRQER YQEMLDPFLE NHDIRQLLNR KSVSIFLNSG LREKIDQLMA SRSQELPNAK SGQLEKKVGA HMTKEEAKEG
0801: EVLSHIETRA AGCDDDEEEA DSGYEDDFED DNTPIRQQYL KPEELVDQNK ASHTLHSWRN NQDTLPSWSN DQDRGVSDDS YHLPSNSLPQ PQLSNIYSHH
0901: NQQCSSSSTR HPSIEMELIY ELRGHMEQLH QEIFEIRRSI NSCMNMQMNL QHSIKDEVAA AIIQSGPMIG SNSDKKSANI ANCCICYEQQ VDSLLYRCGH
1001: MCTCFRCAHE LLWGTGKCPI CETPIIDVVR AYIHS
0001: MASSEVEMSS CQTFNCVLSR PHERCTQRDN NTNNNKKKNN NNNNVRNIHV AAFEKNLNVF VRDHLENCSV SVDDVVDDSI KAVPECSSNK SSVSDHRLSK
0101: TEESRQDVPS SSSSLGSDSD PNSGQPENPS RNAASSLVQI WEARTTQQPP SSNQSLIDSR TSSMGSNALE NSESLESVKE SQMIQPIEEC NNEEEEEEIE
0201: CAPPPLESGE KDREGVRVMD IIRKLSNDSE TITNNDNGSS GNDNSKEVQT TEARSFPQVA CSPRIRGRQA LADLLVQMTR DREKDLACLR ERHCVSKFTN
0301: RGRIQSTLRI RCYERCLAIQ GRHRSKSTSA GSDSNRSSRG SGVMHLLREK YKANSENIET GASTSHASTR GRIMDKDPHK ATEKKVLQET IEKSGVKEIK
0401: EVVSAVENAK KGVLSEISEN RNGLKKLAGE TIQKETVEGK GEKRETKEKV ISKESLEGKG EKRESTKEKA IAKESVAEKA LVGIAEKVNL WNSDEKMNRR
0501: KVVEKGKTEG NTNTERVERN DVLEEATRRI LSVESAERSS TTTSKETMTR CEVAEKVVKG KKKEDFVSLE SNKSKEVEDG NIKPQGVTTQ ADSCLRKPAI
0601: EEKVLQETTV KSDLKKPTEK ESREERREIE EEESTSMGIA EKVNLWNSKE KKNRRKAMEK GKGKTEGKAI TETNELLQEA SRRISNVETA ERSIDTSWIT
0701: VVKVVGDRVI MDKRKSSGET TRSAEIGGGK KEEDLASVEA KSKDVIEDKN MNPQAVIHGS KERDKERNSS QNGEETLSLR NSEAKSTKEI ERQEVTQEEK
0801: SVSHGSREKD KERNSLQYGE KMCFLRNSEA KSTKEIERNK SQEVSQGEES ASHGSRESAK EKNSSQQDDE TSTHRNPNDK KGIKEPEDEE SKKVEREETG
0901: ENVEEASVEF VNDWDGNEME EEEEEEYGDY FNGDDDWIHD ISRPRSYWED LRKERYLEVL NTESEKKDIC NLIERRTVSN FLTSDLRQKI DNLMITRVQS
1001: HIGVPLNQIE EGDEYEEEWE VECSARNEED NETEEEPEKT NLEAPSDVCS QSSARSSTMM SWNFRDQDID KDNEPTTSLS LPEPLVPTNQ STQDMQTISD
1101: LKEQMEQLQR EMLELRNTVK SCIDMQLHFQ KSVTQDLSRS GSSAEQRVDP KKDPLKRKCC VCSEMPVDSL LYRCGHMCTC LKCAHELQWS SKKCPICMAP
1201: IVDVVRAFLD S
0101: TEESRQDVPS SSSSLGSDSD PNSGQPENPS RNAASSLVQI WEARTTQQPP SSNQSLIDSR TSSMGSNALE NSESLESVKE SQMIQPIEEC NNEEEEEEIE
0201: CAPPPLESGE KDREGVRVMD IIRKLSNDSE TITNNDNGSS GNDNSKEVQT TEARSFPQVA CSPRIRGRQA LADLLVQMTR DREKDLACLR ERHCVSKFTN
0301: RGRIQSTLRI RCYERCLAIQ GRHRSKSTSA GSDSNRSSRG SGVMHLLREK YKANSENIET GASTSHASTR GRIMDKDPHK ATEKKVLQET IEKSGVKEIK
0401: EVVSAVENAK KGVLSEISEN RNGLKKLAGE TIQKETVEGK GEKRETKEKV ISKESLEGKG EKRESTKEKA IAKESVAEKA LVGIAEKVNL WNSDEKMNRR
0501: KVVEKGKTEG NTNTERVERN DVLEEATRRI LSVESAERSS TTTSKETMTR CEVAEKVVKG KKKEDFVSLE SNKSKEVEDG NIKPQGVTTQ ADSCLRKPAI
0601: EEKVLQETTV KSDLKKPTEK ESREERREIE EEESTSMGIA EKVNLWNSKE KKNRRKAMEK GKGKTEGKAI TETNELLQEA SRRISNVETA ERSIDTSWIT
0701: VVKVVGDRVI MDKRKSSGET TRSAEIGGGK KEEDLASVEA KSKDVIEDKN MNPQAVIHGS KERDKERNSS QNGEETLSLR NSEAKSTKEI ERQEVTQEEK
0801: SVSHGSREKD KERNSLQYGE KMCFLRNSEA KSTKEIERNK SQEVSQGEES ASHGSRESAK EKNSSQQDDE TSTHRNPNDK KGIKEPEDEE SKKVEREETG
0901: ENVEEASVEF VNDWDGNEME EEEEEEYGDY FNGDDDWIHD ISRPRSYWED LRKERYLEVL NTESEKKDIC NLIERRTVSN FLTSDLRQKI DNLMITRVQS
1001: HIGVPLNQIE EGDEYEEEWE VECSARNEED NETEEEPEKT NLEAPSDVCS QSSARSSTMM SWNFRDQDID KDNEPTTSLS LPEPLVPTNQ STQDMQTISD
1101: LKEQMEQLQR EMLELRNTVK SCIDMQLHFQ KSVTQDLSRS GSSAEQRVDP KKDPLKRKCC VCSEMPVDSL LYRCGHMCTC LKCAHELQWS SKKCPICMAP
1201: IVDVVRAFLD S
Arabidopsis Description
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily /.../n (TAIR:AT1G30860.1); Has 64917 Blast hits to 39974 proteins in 1949 species: Archae - 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source: NCBI BLink). [Source:TAIR;Acc:AT4G20160]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.