Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006576 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28230.1 | PGSC0003DMT400006576 | AT1G15570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g054690.1.1 | Tomato | extracellular | 95.98 | 95.98 |
| VIT_12s0057g00240.t01 | Wine grape | nucleus | 48.63 | 49.36 |
| Bra026274.1-P | Field mustard | nucleus | 39.32 | 47.69 |
| CDX89193 | Canola | nucleus | 39.32 | 47.45 |
| AT4G28230.1 | Thale cress | nucleus | 39.96 | 47.01 |
| CDY18994 | Canola | nucleus | 38.69 | 46.92 |
| KRH30104 | Soybean | nucleus | 32.56 | 46.81 |
| KRH62794 | Soybean | nucleus | 32.56 | 46.11 |
| GSMUA_Achr3P22960_001 | Banana | nucleus | 25.16 | 31.9 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400047304 | EnsemblPlantsGene:PGSC0003DMG400018371 | EntrezGene:102583657 | ncoils:Coil | PANTHER:PTHR36386 | PGSC:PGSC0003DMG400018371 |
| RefSeq:XP_006357532.1 | SEG:seg | UniParc:UPI000295CDA2 | UniProt:M1BKI0 | MapMan:35.2 | : |
Description
Axoneme-associated protein mst101 [Source:PGSC_GENE;Acc:PGSC0003DMG400018371]
Coordinates
chr7:+:48460321..48462099
Molecular Weight (calculated)
52846.6 Da
IEP (calculated)
10.355
GRAVY (calculated)
-0.863
Length
473 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVLQYPEGI NPADVQIWNN AAFDNGDSAD FSSLKRSWLT DSFESDVSSK ENQTPSFENS SSVNLSVSMP FKPLNPNGAL ENSRLKLNKS ISKQSVDEMS
101: MTSRKSGKDS DFRDEKRIDE EIEEIEMEIS RLNSKLEALR IEKAEKSFKI VEKRGRVVPA KFMEPKMSVK IGEEKKKIDE SSSMSAKTKV QTRRGLSLGP
201: AEIFAGTRSR GLSMGPSEIF AGTKAGKLGK QEMITPVQPI QNRRKSCFWK LQEIEEERGK SSSLSPKSRK AAARTTASRQ AVTTIASKKN LKKDDAFLSS
301: VQPKKLFKDG EKSVAASKKP QRPGRVVASR YNQSTNQSSV VRKRSLPEND KDETKRNEKK RSLSVGKTRV SQTENKNLGT ESRVKKRWEI PSEIVVHAST
401: ESEKSPLSIT VKPDLLPRIR IARCTVNETP RDSGPAKRVV ELIGKKSFFS NDEDKEPSVC QVLSFADEDA EEE
101: MTSRKSGKDS DFRDEKRIDE EIEEIEMEIS RLNSKLEALR IEKAEKSFKI VEKRGRVVPA KFMEPKMSVK IGEEKKKIDE SSSMSAKTKV QTRRGLSLGP
201: AEIFAGTRSR GLSMGPSEIF AGTKAGKLGK QEMITPVQPI QNRRKSCFWK LQEIEEERGK SSSLSPKSRK AAARTTASRQ AVTTIASKKN LKKDDAFLSS
301: VQPKKLFKDG EKSVAASKKP QRPGRVVASR YNQSTNQSSV VRKRSLPEND KDETKRNEKK RSLSVGKTRV SQTENKNLGT ESRVKKRWEI PSEIVVHAST
401: ESEKSPLSIT VKPDLLPRIR IARCTVNETP RDSGPAKRVV ELIGKKSFFS NDEDKEPSVC QVLSFADEDA EEE
001: MTSIEATETL NAPPKLQIWN NAAFDDGDSQ ITSAIEASSW SHLNESFDSD CSKENQFPIS VSSSLQSSVS ITEAPSAKSK TVKTKSAADR SKKRDIDAEI
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
Arabidopsis Description
At4g28230 [Source:UniProtKB/TrEMBL;Acc:Q9M0I4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.