Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g120440.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28230.1 | Solyc03g120440.1.1 | AT1G15570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400047304 | Potato | nucleus | 95.98 | 95.98 |
| VIT_12s0057g00240.t01 | Wine grape | nucleus | 47.99 | 48.71 |
| Bra026274.1-P | Field mustard | nucleus | 39.53 | 47.95 |
| CDX89193 | Canola | nucleus | 39.53 | 47.7 |
| CDY18994 | Canola | nucleus | 38.9 | 47.18 |
| AT4G28230.1 | Thale cress | nucleus | 39.96 | 47.01 |
| KRH30104 | Soybean | nucleus | 32.35 | 46.5 |
| KRH62794 | Soybean | nucleus | 32.35 | 45.81 |
| GSMUA_Achr3P22960_001 | Banana | nucleus | 25.16 | 31.9 |
Protein Annotations
| EnsemblPlants:Solyc07g054690.1.1 | EnsemblPlantsGene:Solyc07g054690.1 | ncoils:Coil | PANTHER:PTHR36386 | SEG:seg | UniParc:UPI000276C5FC |
| UniProt:K4CG11 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:62929379..62930800
Molecular Weight (calculated)
52879.6 Da
IEP (calculated)
10.383
GRAVY (calculated)
-0.881
Length
473 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVLQYPEGI NPADVQIWNN AAFDNGDSAD FSSLKRSWLT DSFESDVSSK ENQTPSFENS SSVNLSVSMP FKPLNPNGAM ENSRLKLNKS ISKQSVDEMS
101: MTSRKSGKDS DFRDEKRIDE EIEEIEKEIS RLNSKLEALR FEKAEKSFKI VEKRGRVVPA KFMEPKMSVK IGEEKKKIDE SSSMSAKTKV QTRRGLSLGP
201: SEIFAGTRSR GLSMGPSEIF AGTKAGTSGK QGMITPIQQI QNRRKSCFWK LQEIEEERGK TSSLSPKSRK AAARTMTSRQ AVTTIASKKN LKKDDAFLSS
301: VQPKKLFKDG EKSVPASKKP QRPGRVVASR YNQSMNQSSV VRKRSLPEND KDETKRNEKK RSLSVGKTRV SQTENKNLGT ESRVKKRWEI PSEIVVHAST
401: ESEKSPLSIT VKPDLLPKIR IARCTVSETP RDSGPAKRVI ELIGKKSFFS SDEDKEPSVC QVLSFGDEDA EEE
101: MTSRKSGKDS DFRDEKRIDE EIEEIEKEIS RLNSKLEALR FEKAEKSFKI VEKRGRVVPA KFMEPKMSVK IGEEKKKIDE SSSMSAKTKV QTRRGLSLGP
201: SEIFAGTRSR GLSMGPSEIF AGTKAGTSGK QGMITPIQQI QNRRKSCFWK LQEIEEERGK TSSLSPKSRK AAARTMTSRQ AVTTIASKKN LKKDDAFLSS
301: VQPKKLFKDG EKSVPASKKP QRPGRVVASR YNQSMNQSSV VRKRSLPEND KDETKRNEKK RSLSVGKTRV SQTENKNLGT ESRVKKRWEI PSEIVVHAST
401: ESEKSPLSIT VKPDLLPKIR IARCTVSETP RDSGPAKRVI ELIGKKSFFS SDEDKEPSVC QVLSFGDEDA EEE
001: MTSIEATETL NAPPKLQIWN NAAFDDGDSQ ITSAIEASSW SHLNESFDSD CSKENQFPIS VSSSLQSSVS ITEAPSAKSK TVKTKSAADR SKKRDIDAEI
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
Arabidopsis Description
At4g28230 [Source:UniProtKB/TrEMBL;Acc:Q9M0I4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.