Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89193 | Canola | nucleus | 73.88 | 75.77 |
| CDY18994 | Canola | nucleus | 73.38 | 75.64 |
| Bra026274.1-P | Field mustard | nucleus | 73.13 | 75.38 |
| KRH30104 | Soybean | nucleus | 35.57 | 43.47 |
| KRH62794 | Soybean | nucleus | 35.57 | 42.81 |
| VIT_12s0057g00240.t01 | Wine grape | nucleus | 47.26 | 40.77 |
| PGSC0003DMT400047304 | Potato | nucleus | 47.01 | 39.96 |
| Solyc07g054690.1.1 | Tomato | extracellular | 47.01 | 39.96 |
| GSMUA_Achr3P22960_001 | Banana | nucleus | 28.61 | 30.83 |
Protein Annotations
| MapMan:35.2 | EntrezGene:828938 | ProteinID:AEE85456.1 | EMBL:AK228240 | ArrayExpress:AT4G28230 | EnsemblPlantsGene:AT4G28230 |
| RefSeq:AT4G28230 | TAIR:AT4G28230 | RefSeq:AT4G28230-TAIR-G | EnsemblPlants:AT4G28230.1 | TAIR:AT4G28230.1 | Unigene:At.69904 |
| EMBL:BT006466 | ProteinID:CAB79625.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0008150 | RefSeq:NP_194552.1 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR36386 | UniProt:Q9M0I4 | UniParc:UPI000009E5C5 | SEG:seg |
Description
At4g28230 [Source:UniProtKB/TrEMBL;Acc:Q9M0I4]
Coordinates
chr4:-:13995779..13997307
Molecular Weight (calculated)
44717.8 Da
IEP (calculated)
10.511
GRAVY (calculated)
-0.899
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSIEATETL NAPPKLQIWN NAAFDDGDSQ ITSAIEASSW SHLNESFDSD CSKENQFPIS VSSSLQSSVS ITEAPSAKSK TVKTKSAADR SKKRDIDAEI
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.