Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_09s0002g05240.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28230.1 | VIT_09s0002g05240.t01 | AT1G15570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89193 | Canola | nucleus | 42.06 | 50.0 |
| Bra026274.1-P | Field mustard | nucleus | 41.42 | 49.49 |
| CDY18994 | Canola | nucleus | 41.2 | 49.23 |
| PGSC0003DMT400047304 | Potato | nucleus | 49.36 | 48.63 |
| Solyc07g054690.1.1 | Tomato | extracellular | 48.71 | 47.99 |
| AT4G28230.1 | Thale cress | nucleus | 40.77 | 47.26 |
| KRH30104 | Soybean | nucleus | 32.4 | 45.9 |
| KRH62794 | Soybean | nucleus | 30.26 | 42.22 |
| GSMUA_Achr3P22960_001 | Banana | nucleus | 27.9 | 34.85 |
Protein Annotations
| ArrayExpress:VIT_12s0057g00240 | EMBL:FN595759 | EnsemblPlants:VIT_12s0057g00240.t01 | EnsemblPlantsGene:VIT_12s0057g00240 | EntrezGene:100264907 | EntrezGene:LOC100264907 |
| ncoils:Coil | PANTHER:PTHR36386 | ProteinID:CCB51695 | ProteinID:CCB51695.1 | RefSeq:XP_002271315 | RefSeq:XP_002271315.1 |
| SEG:seg | UniParc:UPI00015CAD6F | UniProt:F6HHJ9 | wikigene:100264907 | wikigene:LOC100264907 | MapMan:35.2 |
Description
No Description!
Coordinates
chr12:+:8890307..8891707
Molecular Weight (calculated)
51370.3 Da
IEP (calculated)
10.070
GRAVY (calculated)
-0.696
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFVEDSDLQ IWNNAAFDSG DFEDSSGIKA PWTPLKNIFT NVSESIDSDQ GKENIIPVIV KQSAVSVKSS VPMNPLQAKS ATVKSQGKSV KVLEEEEVRD
101: EGKIDAEIEE IRLEISRLSS RLDELCLEKV KRSAKMVEKR GRIVAAKFME QKQSVKGGDG VKTEESSSVR TKVHRRGVSL GPSEIVAGVR RGMSLGPSEI
201: AAGGRLRHLG KPEVTPISTQ SRRKSCFWKL EDIDEGKVTK ERGKSMTVSP KNRKIISKTQ ASKQAATTIA SKRPVKKELG FVSSIQPKKL FTDGEKSAKK
301: PLKNGRVVAS RYSLIGNQST GGCSSSLRKR SLPENEDNGK RCDKRRNSSL EKPGGIFQEN GENLDKGRVK KKWEIPSEVV VVHKSLENDE SPPSPRSITK
401: MPDILPMIRT DRCINESPRN SGPAKRVAEL IGRKSYFCAD EDGEDHSVSL SLDFAEACIE EKISCK
101: EGKIDAEIEE IRLEISRLSS RLDELCLEKV KRSAKMVEKR GRIVAAKFME QKQSVKGGDG VKTEESSSVR TKVHRRGVSL GPSEIVAGVR RGMSLGPSEI
201: AAGGRLRHLG KPEVTPISTQ SRRKSCFWKL EDIDEGKVTK ERGKSMTVSP KNRKIISKTQ ASKQAATTIA SKRPVKKELG FVSSIQPKKL FTDGEKSAKK
301: PLKNGRVVAS RYSLIGNQST GGCSSSLRKR SLPENEDNGK RCDKRRNSSL EKPGGIFQEN GENLDKGRVK KKWEIPSEVV VVHKSLENDE SPPSPRSITK
401: MPDILPMIRT DRCINESPRN SGPAKRVAEL IGRKSYFCAD EDGEDHSVSL SLDFAEACIE EKISCK
001: MTSIEATETL NAPPKLQIWN NAAFDDGDSQ ITSAIEASSW SHLNESFDSD CSKENQFPIS VSSSLQSSVS ITEAPSAKSK TVKTKSAADR SKKRDIDAEI
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
Arabidopsis Description
At4g28230 [Source:UniProtKB/TrEMBL;Acc:Q9M0I4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.