Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra016654.1-P | |
| Bra026120.1-P | |
| Bra026756.1-P | |
| Bra033678.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28230.1 | Bra016654.1-P | AT1G15570.1 | 21798944 |
| AT4G28230.1 | Bra026120.1-P | AT1G15570.1 | 21798944 |
| AT4G28230.1 | Bra026756.1-P | AT1G15570.1 | 21798944 |
| AT4G28230.1 | Bra033678.1-P | AT5G43380.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89193 | Canola | nucleus | 97.44 | 96.94 |
| AT4G28230.1 | Thale cress | nucleus | 75.38 | 73.13 |
| KRH30104 | Soybean | nucleus | 35.38 | 41.95 |
| VIT_12s0057g00240.t01 | Wine grape | nucleus | 49.49 | 41.42 |
| KRH62794 | Soybean | nucleus | 35.13 | 41.02 |
| Solyc07g054690.1.1 | Tomato | extracellular | 47.95 | 39.53 |
| PGSC0003DMT400047304 | Potato | nucleus | 47.69 | 39.32 |
| GSMUA_Achr3P22960_001 | Banana | nucleus | 29.74 | 31.1 |
Protein Annotations
Description
AT4G28230 (E=5e-139) | unknown protein
Coordinates
chrA01:-:10256608..10257780
Molecular Weight (calculated)
43638.6 Da
IEP (calculated)
10.521
GRAVY (calculated)
-0.949
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSTEHTETL NAPELQIWNN AAFDDGDSNL TSAIEASWSN LNASFDSDCS KENQIPVSVS SSLKSSVSFS TDDPIRSGRV KEKPHKTVKA RHGDIDAEIE
101: EVEKEMNRLS IRLESLRLEK AEQIARSIAI RGRIVPAKFM ESQKATVRFD TGAKPRTTPR RGVSLGPGEI YSAAKKSETT VTPLQSAQNR RKSCFFKLPG
201: IEEGKKAMTK GRGRSLSPRS RKAKVTAAEK QAATTGGSKR AVKKEESVLS SIQPKKLFKE EEKRKPLKPG RVVASRYSLM SKTAEKDARK RSLPENEEKE
301: NHRSEKRRAS DENRKSEGRV KKRWEIPSEV EVYCSGVSDE TPLGKELPKI RTLRGRVGES PRDSGAAKRV SELESKNRDF TFCQLLRFEE
101: EVEKEMNRLS IRLESLRLEK AEQIARSIAI RGRIVPAKFM ESQKATVRFD TGAKPRTTPR RGVSLGPGEI YSAAKKSETT VTPLQSAQNR RKSCFFKLPG
201: IEEGKKAMTK GRGRSLSPRS RKAKVTAAEK QAATTGGSKR AVKKEESVLS SIQPKKLFKE EEKRKPLKPG RVVASRYSLM SKTAEKDARK RSLPENEEKE
301: NHRSEKRRAS DENRKSEGRV KKRWEIPSEV EVYCSGVSDE TPLGKELPKI RTLRGRVGES PRDSGAAKRV SELESKNRDF TFCQLLRFEE
001: MTSIEATETL NAPPKLQIWN NAAFDDGDSQ ITSAIEASSW SHLNESFDSD CSKENQFPIS VSSSLQSSVS ITEAPSAKSK TVKTKSAADR SKKRDIDAEI
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
Arabidopsis Description
At4g28230 [Source:UniProtKB/TrEMBL;Acc:Q9M0I4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.