Factsheet for Bra026120.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001929.1-P
Bra006369.1-P
Bra006381.1-P
Bra008581.1-P
Bra012650.1-P
Bra013872.1-P
Bra014835.1-P
Bra017408.1-P
Bra018036.1-P
Bra018081.1-P
Bra027683.1-P
Bra028351.1-P
Bra028357.1-P
Bra028380.1-P
Bra029917.1-P
Bra032422.1-P
Bra033769.1-P
Bra039199.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15570.1	Bra028380.1-P	AT1G61870.1	20706207
AT1G15570.1	Bra027683.1-P	AT1G64180.1	21798944
AT1G15570.1	Bra039199.1-P	AT2G23430.1	20018602
AT1G15570.1	Bra006369.1-P	AT3G11270.1	20706207
AT1G15570.1	Bra017408.1-P	AT3G11270.1	20706207
AT1G15570.1	Bra032422.1-P	AT3G11270.1	20706207
AT1G15570.1	Bra001929.1-P	AT3G24140.1	21798944
AT1G15570.1	Bra028351.1-P	AT3G24140.1	21798944
AT1G15570.1	Bra028357.1-P	AT3G24140.1	21798944
AT1G15570.1	Bra018081.1-P	AT3G48150.1	21798944
AT1G15570.1	Bra033769.1-P	AT3G48150.1	21798944
AT1G15570.1	Bra018036.1-P	AT3G48750.1	16415207
AT1G15570.1	Bra029917.1-P	AT3G48750.1	16415207
AT1G15570.1	Bra014835.1-P	AT3G54180.1	20706207
AT1G15570.1	Bra012650.1-P	AT4G17680.1	21798944
AT1G15570.1	Bra013872.1-P	AT4G25200.1	21798944
AT1G15570.1	Bra006381.1-P	AT5G16970.1	20706207
AT1G15570.1	Bra008581.1-P	AT5G16970.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36574	Canola	mitochondrion, nucleus	90.77	97.02
Bra026756.1-P	Field mustard	plastid	74.89	85.33
Bra016654.1-P	Field mustard	nucleus, plastid	78.54	82.25
AT1G15570.1	Thale cress	nucleus, plastid	79.18	82.0
Bra000822.1-P	Field mustard	nucleus	57.3	70.82
Bra003563.1-P	Field mustard	plastid	64.81	69.91
Bra031463.1-P	Field mustard	nucleus	54.94	69.38
Bra008477.1-P	Field mustard	plastid	64.81	66.08
Bra035186.1-P	Field mustard	plastid	64.38	64.94
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	33.91	63.97
KRH47513	Soybean	nucleus	55.15	53.99
VIT_09s0002g05240.t01	Wine grape	nucleus	56.22	53.47
KRH44391	Soybean	nucleus	51.5	50.96
Solyc03g120440.1.1	Tomato	nucleus, plastid	47.21	48.03
PGSC0003DMT400006576	Potato	nucleus	47.42	47.73
Bra008973.1-P	Field mustard	nucleus, plastid	43.99	46.91
Os12t0502300-01	Rice	nucleus, plastid	46.78	44.49
Bra033658.1-P	Field mustard	nucleus	33.69	44.1
OQU77084	Sorghum	nucleus	45.71	43.65
Bra032220.1-P	Field mustard	nucleus	33.26	43.42
Bra040792.1-P	Field mustard	nucleus, plastid	33.69	43.13
KXG23504	Sorghum	mitochondrion, nucleus	44.21	42.65
Bra040710.1-P	Field mustard	nucleus	33.91	42.59
Bra040793.1-P	Field mustard	nucleus	33.05	42.42
TraesCSU01G054300.1	Wheat	nucleus	45.49	42.32
TraesCS3D01G529100.1	Wheat	plastid	45.49	41.98
TraesCS5D01G121100.2	Wheat	plastid	45.71	41.93
Bra040753.1-P	Field mustard	nucleus, plastid	32.62	41.87
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	43.56	41.86
TraesCS3A01G523600.1	Wheat	plastid	45.49	41.81
TraesCS5B01G114300.2	Wheat	plastid	45.28	41.62
TraesCS5A01G108500.2	Wheat	plastid	45.28	41.54
GSMUA_Achr3P25340_001	Banana	nucleus	48.28	41.51
HORVU3Hr1G114440.21	Barley	nucleus, plastid	45.06	41.42
Zm00001d014756_P006	Maize	nucleus, plastid	45.49	40.69
Bra015671.1-P	Field mustard	plastid	33.26	40.16
Bra023606.1-P	Field mustard	plastid	35.19	39.14
Bra032202.1-P	Field mustard	plastid	33.05	36.49
Bra022173.1-P	Field mustard	nucleus, plastid	28.54	35.28
Bra017726.1-P	Field mustard	nucleus	25.54	29.31
Bra024504.1-P	Field mustard	nucleus	25.97	28.88
Bra037265.1-P	Field mustard	nucleus	25.11	28.61
Bra025831.1-P	Field mustard	nucleus	24.89	28.29
Bra016460.1-P	Field mustard	nucleus	24.89	28.29
Bra002046.1-P	Field mustard	nucleus	23.82	28.24
Bra003727.1-P	Field mustard	nucleus	22.75	27.68
Bra028741.1-P	Field mustard	nucleus	24.46	27.47
Bra015762.1-P	Field mustard	nucleus	25.32	27.38
Bra005880.1-P	Field mustard	nucleus, plastid	24.03	27.05
Bra011769.1-P	Field mustard	nucleus	23.39	25.47
Bra026065.1-P	Field mustard	nucleus	22.75	20.95
Bra036544.1-P	Field mustard	nucleus	43.13	20.36
Bra016640.1-P	Field mustard	nucleus	23.61	16.79

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EnsemblPlantsGene:Bra026120	EnsemblPlants:Bra026120.1	EnsemblPlants:Bra026120.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:M4EBG1	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177
PANTHER:PTHR10177:SF346	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000253F0AE	SEG:seg

Description

AT1G15570 (E=8e-196) CYCA2;3 | CYCA2;3 (CYCLIN A2;3); cyclin-dependent protein kinase regulator

Coordinates

chrA06:+:5993244..5995953

Molecular Weight (calculated)

52455.7 Da

IEP (calculated)

7.166

GRAVY (calculated)

-0.262

Length

466 amino acids

Sequence
(BLAST)

001: MVLQRSEEDD AVLKQQDFQG SVSSSCGILN MGKENVVSRP LTRAFASALR ASEAASTTHN QQRANTKRPA SEDLNVTAPP NKRKKRAVLG DISNVSFNAA
101: QLEARDIKQV KKSQGLASCV TSEVTDLQSG TNAKAEVVSV TAGNTNDTAD NCIEKHKLPP RPLGRSSASI VEKSGVIGSS TALDLPKFTD IDSDDKDPLL
201: CCLYAPEIYH NLRVSELKRR PVPDFMERIQ KDVTQSMRGI LVDWLVEVSE EYTLVPDSLY LTVYLIDWFL HGNYLERQRL QLLGITCMLI ASKYEEISAP
301: RIEEFCFITD NTYTRDQVLE MENQVLAHFS FQIYTPTPKT FLRRFLRAAQ ASYLRPRLEL ECLASYLTEL TLIDYHFLKF LPSVIAASAV FLAKWTLDQS
401: NHPWNPTLEH YTTYKASDLK ASVYALQDLQ LNTKGCPLSA IRMKYRQEKF TSVAVLMSPK LLDTLF

Best Arabidopsis Sequence Match ( AT1G15570.1 )
(BLAST)

001: MGKENAVSRP FTRSLASALR ASEVTSTTQN QQRVNTKRPA LEDTRATGPN KRKKRAVLGE ITNVNSNTAI LEAKNSKQIK KGRGHGLAST SQLATSVTSE
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF

Arabidopsis Description

CYCA2-3CYCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.