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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 3
  • nucleus 4
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001010.1-P
Bra001415.1-P
Bra002236.1-P
Bra003644.1-P
Bra004810.1-P
Bra006091.1-P
Bra006664.1-P
Bra008222.1-P
Bra008983.1-P
Bra008984.1-P
Bra010508.1-P
Bra010728.1-P
Bra011568.1-P
Bra011642.1-P
Bra013108.1-P
Bra015165.1-P
Bra018036.1-P
Bra019845.1-P
Bra022660.1-P
Bra023311.1-P
Bra023312.1-P
Bra025260.1-P
Bra027579.1-P
Bra028187.1-P
Bra028409.1-P
Bra029227.1-P
Bra029917.1-P
Bra030844.1-P
Bra032991.1-P
Bra034380.1-P
Bra034402.1-P
Bra034824.1-P
Bra035427.1-P
Bra036764.1-P
Bra037664.1-P
Bra038550.1-P
Bra038667.1-P
Bra039089.1-P
Bra039131.1-P
Bra039578.1-P
Bra040507.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G47220.1 Bra034402.1-P AT1G35720.1 20706207
AT1G47220.1 Bra036764.1-P AT1G35720.1 20706207
AT1G47220.1 Bra039578.1-P AT1G35720.1 20706207
AT1G47220.1 Bra035427.1-P AT1G59750.1 20706207
AT1G47220.1 Bra008222.1-P AT1G75750.1 20706207
AT1G47220.1 Bra029227.1-P AT1G75750.1 20706207
AT1G47220.1 Bra038550.1-P AT1G75750.1 20706207
AT1G47220.1 Bra003644.1-P AT1G78380.1 20706207
AT1G47220.1 Bra015165.1-P AT2G05710.1 20706207
AT1G47220.1 Bra019845.1-P AT2G05710.1 20706207
AT1G47220.1 Bra034380.1-P AT2G27970.1 20706207
AT1G47220.1 Bra004810.1-P AT2G44160.1 20706207
AT1G47220.1 Bra037664.1-P AT2G44160.1 20706207
AT1G47220.1 Bra001010.1-P AT3G01280.1 20706207
AT1G47220.1 Bra006664.1-P AT3G01280.1 20706207
AT1G47220.1 Bra039131.1-P AT3G01280.1 20706207
AT1G47220.1 Bra040507.1-P AT3G01280.1 20706207
AT1G47220.1 Bra001415.1-P AT3G11630.1 20706207
AT1G47220.1 Bra034824.1-P AT3G11630.1 20706207
AT1G47220.1 Bra038667.1-P AT3G11630.1 20706207
AT1G47220.1 Bra025260.1-P AT3G27240.1 20706207
AT1G47220.1 Bra032991.1-P AT3G27240.1 20706207
AT1G47220.1 Bra039089.1-P AT3G27240.1 20706207
AT1G47220.1 Bra018036.1-P AT3G48750.1 20706207
AT1G47220.1 Bra029917.1-P AT3G48750.1 20706207
AT1G47220.1 Bra013108.1-P AT4G09320.1 20706207
AT1G47220.1 Bra027579.1-P AT4G09320.1 20706207
AT1G47220.1 Bra030844.1-P AT4G09320.1 20706207
AT1G47220.1 Bra011568.1-P AT4G34870.1 20706207
AT1G47220.1 Bra010508.1-P AT4G35830.1 20706207
AT1G47220.1 Bra011642.1-P AT4G35830.1 20706207
AT1G47220.1 Bra010728.1-P AT4G38740.1 20706207
AT1G47220.1 Bra006091.1-P AT5G11170.1 20706207
AT1G47220.1 Bra008983.1-P AT5G11170.1 20706207
AT1G47220.1 Bra008984.1-P AT5G11170.1 20706207
AT1G47220.1 Bra023311.1-P AT5G11170.1 20706207
AT1G47220.1 Bra023312.1-P AT5G11170.1 20706207
AT1G47220.1 Bra002236.1-P AT5G19440.1 20706207
AT1G47220.1 Bra028187.1-P AT5G38480.1 20706207
AT1G47220.1 Bra028409.1-P AT5G38480.1 20706207
AT1G47220.1 Bra022660.1-P AT5G53560.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY06757 Canola nucleus, plastid 99.72 99.72
Bra032220.1-P Field mustard nucleus 88.15 89.64
Bra040793.1-P Field mustard nucleus 88.15 88.15
AT1G47210.2 Thale cress nucleus 86.23 84.14
Bra033658.1-P Field mustard nucleus 68.87 70.22
AT1G47220.1 Thale cress nucleus 63.09 70.03
Bra040710.1-P Field mustard nucleus 71.35 69.81
Bra040792.1-P Field mustard nucleus, plastid 69.97 69.78
KRH52056 Soybean nucleus 36.36 62.56
VIT_18s0001g09580.t01 Wine grape nucleus, plastid 60.61 60.27
Solyc12g088530.1.1 Tomato nucleus 57.3 58.76
PGSC0003DMT400055428 Potato nucleus 59.23 58.42
Solyc04g078310.2.1 Tomato nucleus 58.95 57.68
PGSC0003DMT400030222 Potato nucleus 55.92 57.34
PGSC0003DMT400030176 Potato nucleus 55.92 57.02
OQU91386 Sorghum nucleus 40.77 56.7
GSMUA_Achr10P... Banana nucleus 48.76 55.84
KRH15427 Soybean nucleus, plastid 55.37 55.22
Solyc12g088520.1.1 Tomato nucleus 53.44 54.65
KRH61375 Soybean nucleus 48.76 54.13
Solyc12g088500.1.1 Tomato nucleus 52.62 53.95
KRH05614 Soybean nucleus 54.55 53.95
KRH61369 Soybean nucleus 48.48 53.82
Solyc12g088470.1.1 Tomato nucleus 53.17 53.61
KRH52055 Soybean nucleus 52.07 52.79
KRH61371 Soybean nucleus 49.59 51.58
GSMUA_Achr2P21530_001 Banana cytosol, nucleus, plastid 40.22 51.05
TraesCS4D01G076900.1 Wheat nucleus 51.79 50.81
TraesCS4B01G078300.1 Wheat nucleus 51.52 50.4
HORVU4Hr1G013320.1 Barley nucleus 51.79 50.4
KRH61373 Soybean nucleus, plastid 52.07 50.4
Zm00001d033365_P002 Maize nucleus 50.69 49.46
TraesCS4A01G236700.2 Wheat plastid 50.96 49.33
GSMUA_Achr6P11130_001 Banana nucleus 52.89 49.1
GSMUA_Achr2P21520_001 Banana nucleus 47.38 47.78
TraesCS5B01G078200.1 Wheat plastid 49.04 47.21
TraesCS5D01G084700.1 Wheat nucleus 49.04 47.09
TraesCS5A01G072000.1 Wheat plastid 48.76 47.07
Zm00001d013744_P001 Maize nucleus 45.18 45.94
Os12t0581800-01 Rice nucleus, plastid 47.93 45.19
TraesCS4D01G253200.1 Wheat nucleus 28.65 42.62
Zm00001d030849_P001 Maize nucleus 49.59 42.55
EES16237 Sorghum nucleus, plastid 49.59 42.06
TraesCS4B01G254000.1 Wheat nucleus 41.87 40.43
Zm00001d041334_P001 Maize nucleus, plastid 47.93 39.82
TraesCS4D01G253900.1 Wheat nucleus 41.32 39.47
TraesCS4A01G050700.1 Wheat nucleus 41.05 39.21
HORVU5Hr1G018820.2 Barley nucleus, plastid 49.04 39.21
Bra031463.1-P Field mustard nucleus 39.67 39.02
Bra000822.1-P Field mustard nucleus 40.22 38.73
EER95303 Sorghum nucleus, plastid 40.5 38.58
Bra026756.1-P Field mustard plastid 42.15 37.41
TraesCS4A01G051300.1 Wheat nucleus 34.44 36.44
Bra015671.1-P Field mustard plastid 38.57 36.27
TraesCS4B01G253100.1 Wheat nucleus 33.33 35.48
Bra023606.1-P Field mustard plastid 40.5 35.08
Bra032202.1-P Field mustard plastid 39.39 33.89
Bra022173.1-P Field mustard nucleus, plastid 34.99 33.69
Bra003563.1-P Field mustard plastid 39.67 33.33
Bra016654.1-P Field mustard nucleus, plastid 40.77 33.26
HORVU4Hr1G069310.3 Barley nucleus 38.02 33.25
Bra026120.1-P Field mustard nucleus 41.87 32.62
Bra008477.1-P Field mustard plastid 39.94 31.73
Bra035186.1-P Field mustard plastid 39.67 31.17
Bra002046.1-P Field mustard nucleus 33.33 30.79
Bra008973.1-P Field mustard nucleus, plastid 36.64 30.43
Bra005880.1-P Field mustard nucleus, plastid 33.06 28.99
Os03t0607600-00 Rice nucleus 48.48 28.95
Bra028741.1-P Field mustard nucleus 32.78 28.67
Bra017726.1-P Field mustard nucleus 31.68 28.33
Bra024504.1-P Field mustard nucleus 32.51 28.16
Zm00001d048127_P001 Maize plastid 36.91 27.97
Bra037265.1-P Field mustard nucleus 31.13 27.63
Bra016460.1-P Field mustard nucleus 31.13 27.56
Bra003727.1-P Field mustard nucleus 28.37 26.89
Os03t0208700-00 Rice nucleus 30.03 26.65
Bra025831.1-P Field mustard nucleus 30.03 26.59
Bra015762.1-P Field mustard nucleus 30.85 25.99
Bra011769.1-P Field mustard nucleus 28.93 24.53
Bra026065.1-P Field mustard nucleus 28.93 20.75
Bra016640.1-P Field mustard nucleus 29.2 16.18
Bra036544.1-P Field mustard nucleus 39.67 14.59
Os03t0208800-00 Rice nucleus 14.6 13.35
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.1EnsemblPlantsGene:Bra040753EnsemblPlants:Bra040753.1EnsemblPlants:Bra040753.1-PInterPro:Cyclin-A_plant
InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634UniProt:M4FI24PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771
ScanProsite:PS00292PANTHER:PTHR10177PANTHER:PTHR10177:SF270SMART:SM00385SMART:SM01332SUPFAM:SSF47954
UniParc:UPI000253E86FSEG:seg::::
Description
AT1G47210 (E=1e-171) CYCA3;2 | cyclin family protein
Coordinates
chrScaffold000249:+:36873..38568
Molecular Weight (calculated)
41699.8 Da
IEP (calculated)
8.868
GRAVY (calculated)
-0.235
Length
363 amino acids
Sequence
(BLAST)
001: MTQQEICVRV KRAAAKRKAM ATEEERVTRK RVVLGELLNL SNVTNLNQKR EIVKPTKSLG AKQRKAAPVA LAAVEFRSDI DARSDDPKMC GPYVSDIYDY
101: LREMEVKPKN RPLPDYIEKV QKDVTPTMRG VLVDWLVEVA EEYKLLPETL YLTVSYIDRF LSLKTVNKQR LQLVGVSAML IASKYEEISP PKVDDFCYIT
201: DNTFSKQDVV KMEADILLAL QFEMGRPTVN SFIRRFTRVA QEDFNVPHLQ LEPLSCYLSE LSILDYKAVK FVPSMLAASA VFLARFIIRP KQHPWNQMLE
301: EYTKYKAADL QECVGIIHDL YLSRRGGALQ AVRDKYKHHK FQCVATLPVS PELPVTFWED VTI
Best Arabidopsis Sequence Match ( AT1G47210.2 )
(BLAST)
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
Arabidopsis Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.