Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G076900.1 | Wheat | nucleus | 96.53 | 97.84 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 95.47 | 96.5 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 94.4 | 94.91 |
| OQU91386 | Sorghum | nucleus | 55.47 | 79.69 |
| Zm00001d033365_P002 | Maize | nucleus | 73.87 | 74.46 |
| Zm00001d013744_P001 | Maize | nucleus | 65.87 | 69.19 |
| TraesCS5A01G072000.1 | Wheat | plastid | 65.87 | 65.69 |
| GSMUA_Achr10P... | Banana | nucleus | 55.47 | 65.62 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 64.8 | 62.15 |
| KRH52056 | Soybean | nucleus | 34.4 | 61.14 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 59.2 | 60.82 |
| PGSC0003DMT400030222 | Potato | nucleus | 55.2 | 58.47 |
| CDY06752 | Canola | nucleus | 44.27 | 58.25 |
| PGSC0003DMT400055428 | Potato | nucleus | 56.8 | 57.88 |
| PGSC0003DMT400030176 | Potato | nucleus | 54.93 | 57.87 |
| Solyc04g078310.2.1 | Tomato | nucleus | 56.8 | 57.41 |
| Solyc12g088500.1.1 | Tomato | nucleus | 54.13 | 57.34 |
| CDY22369 | Canola | nucleus | 53.6 | 57.27 |
| Bra033658.1-P | Field mustard | nucleus | 53.6 | 56.46 |
| Solyc12g088470.1.1 | Tomato | nucleus | 54.13 | 56.39 |
| Solyc12g088520.1.1 | Tomato | nucleus | 53.07 | 56.06 |
| Solyc12g088530.1.1 | Tomato | nucleus | 52.27 | 55.37 |
| AT5G43080.1 | Thale cress | nucleus | 52.27 | 55.21 |
| KRH61375 | Soybean | nucleus | 46.4 | 53.21 |
| CDY17091 | Canola | nucleus | 50.67 | 53.07 |
| CDY66770 | Canola | nucleus | 50.93 | 52.76 |
| KRH61369 | Soybean | nucleus | 45.87 | 52.6 |
| KRH15427 | Soybean | nucleus, plastid | 50.93 | 52.47 |
| CDY17037 | Canola | nucleus, plastid | 50.93 | 52.47 |
| Bra032220.1-P | Field mustard | nucleus | 49.87 | 52.38 |
| CDY23653 | Canola | nucleus | 49.6 | 52.1 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 50.4 | 51.92 |
| KRH61371 | Soybean | nucleus | 48.27 | 51.86 |
| CDY47596 | Canola | nucleus | 49.87 | 51.52 |
| Bra040793.1-P | Field mustard | nucleus | 49.87 | 51.52 |
| KRH52055 | Soybean | nucleus | 49.07 | 51.4 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 50.67 | 51.35 |
| CDY17039 | Canola | nucleus | 49.6 | 51.24 |
| KRH05614 | Soybean | nucleus | 50.13 | 51.23 |
| CDY47595 | Canola | nucleus, plastid | 50.67 | 51.21 |
| AT1G47220.1 | Thale cress | nucleus | 44.53 | 51.07 |
| CDY06757 | Canola | nucleus, plastid | 49.33 | 50.96 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 49.33 | 50.96 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 46.13 | 50.73 |
| Bra040710.1-P | Field mustard | nucleus | 50.13 | 50.67 |
| AT1G47210.2 | Thale cress | nucleus | 49.33 | 49.73 |
| PGSC0003DMT400056625 | Potato | nucleus | 49.33 | 48.68 |
| Solyc10g049360.1.1 | Tomato | nucleus | 48.53 | 48.15 |
| KRH61373 | Soybean | nucleus, plastid | 47.73 | 47.73 |
| Os03t0607600-00 | Rice | nucleus | 68.53 | 42.27 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 40.27 | 39.74 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 35.47 | 38.78 |
| TraesCS3A01G157000.1 | Wheat | plastid | 46.4 | 33.92 |
| TraesCS3A01G523600.1 | Wheat | plastid | 42.4 | 31.36 |
| TraesCS5A01G108500.2 | Wheat | plastid | 41.33 | 30.51 |
| TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 39.73 | 28.38 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 32.53 | 27.98 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 30.4 | 27.54 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 32.53 | 26.52 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 29.6 | 26.49 |
| TraesCS2A01G404800.1 | Wheat | nucleus | 26.93 | 24.94 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 20.8 | 23.71 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G236700.2 | EnsemblPlantsGene:TraesCS4A01G236700 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF345 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.1 | : |
Description
No Description!
Coordinates
chr4A:-:545235570..545237367
Molecular Weight (calculated)
41561.0 Da
IEP (calculated)
9.372
GRAVY (calculated)
-0.283
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKENSAYA AAAAAAPRMT RASTKRAAAV TAVAVAAKRK RVALSEIPTL PNGAPQPHAK PKKPSSQVAN PKKRSISSLS QSLPAPKPAT DAADETGDPQ
101: LCAPYASDIY SYLRSMEVQA KRRPAADYIE RVQVDVTPNM RGILVDWLVE VAEEYKLVSD TLYLTVSYID RFLSANSLNR QKLQLLGVSA MLIASKYEEI
201: SPPNVEDFCY ITDNTYMKQE LVKMERDILN NLKFEMGNPT AKTFLRMFIK SGQEEKKYPS LLLEFMGSYL TELSLLDYGC VRFLPSAVAA SAVFVARLTL
301: NPDSNPWSKK LQSVTGYSAS ELKDCITAIH DLQLCRKGQS WNAIRDKYKQ HRFKGVSALL PPVGIPASYF EDLKE
101: LCAPYASDIY SYLRSMEVQA KRRPAADYIE RVQVDVTPNM RGILVDWLVE VAEEYKLVSD TLYLTVSYID RFLSANSLNR QKLQLLGVSA MLIASKYEEI
201: SPPNVEDFCY ITDNTYMKQE LVKMERDILN NLKFEMGNPT AKTFLRMFIK SGQEEKKYPS LLLEFMGSYL TELSLLDYGC VRFLPSAVAA SAVFVARLTL
301: NPDSNPWSKK LQSVTGYSAS ELKDCITAIH DLQLCRKGQS WNAIRDKYKQ HRFKGVSALL PPVGIPASYF EDLKE
001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
Arabidopsis Description
CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.