Factsheet for TraesCS3B01G353300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G327000.1
TraesCS2B01G355000.6
TraesCS2D01G335900.1
TraesCS6A01G208300.2
TraesCS6A01G274500.1
TraesCS6B01G236800.1
TraesCS6B01G302000.1
TraesCS6D01G191900.3
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS2A01G327000.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS2B01G355000.6	AT4G24690.1	21798944
AT1G55890.1	TraesCS2D01G335900.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6A01G208300.2	AT4G24690.1	21798944
AT1G55890.1	TraesCS6B01G236800.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6D01G191900.3	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G317700.1	Wheat	plastid	94.26	83.47
TraesCS3A01G324200.1	Wheat	plastid	89.95	82.64
HORVU3Hr1G077400.1	Barley	cytosol	74.64	81.46
TraesCS3B01G353500.1	Wheat	plastid	82.06	68.19
TraesCS3B01G361800.1	Wheat	plastid	67.7	64.46
Os01t0785700-01	Rice	mitochondrion	59.33	57.14
Zm00001d012606_P001	Maize	mitochondrion	56.22	51.88
EES01580	Sorghum	mitochondrion	54.31	51.71
EES01579	Sorghum	mitochondrion	52.39	51.05
EER95222	Sorghum	mitochondrion	55.98	47.46
GSMUA_Achr10P...	Banana	mitochondrion	43.06	44.89
VIT_00s0271g00050.t01	Wine grape	mitochondrion	20.57	37.89
VIT_00s0271g00070.t01	Wine grape	mitochondrion	32.06	35.36
VIT_00s0271g00040.t01	Wine grape	cytosol	17.22	35.29
VIT_00s0274g00040.t01	Wine grape	mitochondrion	31.34	34.29
VIT_00s0271g00080.t01	Wine grape	mitochondrion	29.19	33.61
PGSC0003DMT400012953	Potato	cytosol	29.9	32.98
Solyc03g031460.1.1	Tomato	plastid	29.43	32.45
KRH41973	Soybean	nucleus	29.43	32.28
PGSC0003DMT400055889	Potato	plastid	29.19	31.04
Solyc02g079830.1.1	Tomato	mitochondrion	29.67	31.0
CDY26081	Canola	mitochondrion	29.19	30.81
CDY66550	Canola	mitochondrion	22.01	30.77
PGSC0003DMT400055888	Potato	mitochondrion	27.75	30.77
KRH49916	Soybean	cytosol	29.43	30.75
AT1G55890.1	Thale cress	mitochondrion	28.95	30.4
Bra039373.1-P	Field mustard	cytosol	19.86	30.29
Bra037096.1-P	Field mustard	mitochondrion	28.71	30.23
CDY08267	Canola	mitochondrion	28.71	30.23
PGSC0003DMT400071165	Potato	extracellular	12.68	30.11
CDX82550	Canola	mitochondrion	27.27	29.01
CDY24208	Canola	mitochondrion	27.03	28.68
CDY43367	Canola	mitochondrion	26.79	28.43
AT3G13160.1	Thale cress	mitochondrion	26.32	27.92
Bra001492.1-P	Field mustard	mitochondrion	26.55	27.75
Solyc02g079820.2.1	Tomato	cytosol, plastid	19.38	25.88
TraesCS3B01G355800.1	Wheat	mitochondrion	23.68	25.38
CDY24210	Canola	plastid	26.32	25.11
CDY43368	Canola	plastid	26.32	25.06
TraesCS6B01G260000.1	Wheat	mitochondrion	26.32	23.81
TraesCS6B01G473500.1	Wheat	mitochondrion	23.68	23.4
Bra039372.1-P	Field mustard	cytosol, plastid	26.08	22.8
AT3G13150.1	Thale cress	plastid	27.27	20.69
TraesCS1B01G176200.1	Wheat	mitochondrion	21.05	20.66
TraesCS7B01G136500.1	Wheat	endoplasmic reticulum, plastid	21.77	20.45

Protein Annotations

EnsemblPlants:TraesCS3B01G353300.1	EnsemblPlantsGene:TraesCS3B01G353300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1622	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:564023276..564024667

Molecular Weight (calculated)

45944.7 Da

IEP (calculated)

7.008

GRAVY (calculated)

-0.423

Length

418 amino acids

Sequence
(BLAST)

001: MASAAAAAAA ARANSLSRIF KRNPKTKRAP APAPTPTPKP PAADADPITG QKLPKPLGAQ PARNPDKLVS EFVQASTVSS RFRERHRVYE VAVSRLTSFG
101: RQDGIEAIIE AQKPFLETSN EGFATRLIRL YGRASMPSHA AATFHELPAQ HKSTMTFNAL LAAYAEAGDL DGLTTAFREI PATHPSIVPS VYSYNILIRA
201: LCQKSDLSAA LEVVLLMEKH GISPDIITFN TLLNGFCNNG PTDEAETVWE MMKERNLEPN AKCYNAKLRG LVAEGRIDDA AAVLERLEKD GPKPDTVSYN
301: ELIRGYLKAG RLQEAKKLYD DLVKNHCAAN KGTYETLVPH LLQVGDLDTE DVVNALVDAL RVEEAAKLVD IGRKKYYYSR KGLRMRGSAK VSELRAETDE
401: QEAISEEKEC EVEHETEK

Best Arabidopsis Sequence Match ( AT3G13150.1 )
(BLAST)

001: MSKVGSSLYS RLHGIFKESS IATAKSAKPR SQTKSTKFPS KLKASTASVG DGGQSSNDAK DSKNSKLTQK VEKFKRSCES ESFRQVHGLY SAFIRRLREA
101: KKFSTIDEVL QYQKKFDDIK SEDFVIRIML LYGYSGMAEH AHKLFDEMPE LNCERTVKSF NALLSAYVNS KKLDEAMKTF KELPEKLGIT PDLVTYNTMI
201: KALCRKGSMD DILSIFEELE KNGFEPDLIS FNTLLEEFYR RELFVEGDRI WDLMKSKNLS PNIRSYNSRV RGLTRNKKFT DALNLIDVMK TEGISPDVHT
301: YNALITAYRV DNNLEEVMKC YNEMKEKGLT PDTVTYCMLI PLLCKKGDLD RAVEVSEEAI KHKLLSRPNM YKPVVERLMG AGKIDEATQL VKNGKLQSYF
401: RYLPDLSAGK KKTTSSPVSS SAKTTSTPVS SSPDTSSFLL SLSLAADSSS SDSDSSSPDS SSSVSSSPDS SSSVSSSPDS YSSFSSSPDS SSSVSSSLFS
501: SSRENSSSPD YSNSVSSSLD YSGSVSSSSD YSSSVFPSAN SSSSSSGLLD D

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13150 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.