Factsheet for TraesCS3B01G355800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G319900.1	Wheat	mitochondrion	85.9	99.11
TraesCS3A01G326500.1	Wheat	mitochondrion	98.46	98.46
HORVU3Hr1G077780.1	Barley	mitochondrion	95.64	95.64
Os01t0793200-01	Rice	mitochondrion	84.1	84.1
EES01589	Sorghum	mitochondrion	82.82	82.4
Zm00001d043225_P001	Maize	mitochondrion	81.79	81.17
HORVU5Hr1G041750.1	Barley	cytosol	58.97	64.79
GSMUA_Achr6P00410_001	Banana	mitochondrion	53.59	59.38
KRH11411	Soybean	nucleus	48.46	48.71
CDY07260	Canola	cytosol	18.72	47.71
VIT_10s0116g00030.t01	Wine grape	plastid	46.67	45.96
VIT_10s0116g00090.t01	Wine grape	mitochondrion	29.23	44.71
CDY25328	Canola	mitochondrion, plastid	46.67	44.61
Bra028380.1-P	Field mustard	mitochondrion	46.41	44.36
CDY47165	Canola	mitochondrion	46.15	44.12
Solyc10g005280.1.1	Tomato	mitochondrion	45.38	44.03
PGSC0003DMT400029367	Potato	mitochondrion	45.38	44.03
AT1G61870.1	Thale cress	mitochondrion	45.9	43.87
KRH20872	Soybean	mitochondrion	19.74	43.75
CDX97972	Canola	cytosol	29.23	40.86
Bra019842.1-P	Field mustard	cytosol	29.23	40.86
AT1G11630.1	Thale cress	mitochondrion	42.05	40.49
CDY49792	Canola	plastid	41.28	39.46
KRH20873	Soybean	cytosol, mitochondrion	12.82	39.37
TraesCS6B01G473500.1	Wheat	mitochondrion	29.49	27.19
TraesCS1B01G176200.1	Wheat	mitochondrion	26.67	24.41
TraesCS3B01G361800.1	Wheat	plastid	27.44	24.37
TraesCS6B01G260000.1	Wheat	mitochondrion	28.72	24.24
TraesCS3B01G353300.1	Wheat	plastid	25.38	23.68
TraesCS7B01G136500.1	Wheat	endoplasmic reticulum, plastid	24.87	21.8
TraesCS3B01G353500.1	Wheat	plastid	26.15	20.28

Protein Annotations

EnsemblPlants:TraesCS3B01G355800.1	EnsemblPlantsGene:TraesCS3B01G355800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF579
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:17.7.1.3.2	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:566183030..566184202

Molecular Weight (calculated)

42742.5 Da

IEP (calculated)

9.346

GRAVY (calculated)

-0.186

Length

390 amino acids

Sequence
(BLAST)

001: MAAAVRLFLR RRLATATATP PTPASILNPS SPTTPLTSQQ KTRLAISLLK SSPPPPPDQI LSICRAAALS PKTHLDRVAL SLATSRLSTA PDSLRDLTSS
101: LLIPHHAPHA IVLFGQAGLL PDAISTFQSS PSTRSLNALL FACIVAGNHA EAARIFQTFP DAHRVKPNAE TFNSIIKSFS ESGTTRSFYS VFDEMCKEGV
201: KPTATTFTAA IAGFYKEERF DDVEKVIKLM KKHGCGESLQ VYNARVQGLC KLGRNGDARA LLSEMAKKGT KPNWVTYNHL IYGFCKEGDL EEAKRLYKEM
301: GKKGLVGDSG FYFTVIFHLC KAGDFDTALG VYNEIIPRNW VPCFSTMKML VNGLAGSSRI DEAKGIIEKM KEKFPDRDEG WKEVEEALPQ

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.