Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3A01G331600.1 | Wheat | plastid | 93.17 | 89.11 |
TraesCS3D01G325200.1 | Wheat | plastid | 84.74 | 82.85 |
HORVU6Hr1G019320.1 | Barley | plastid | 79.04 | 74.78 |
TraesCS3B01G353300.1 | Wheat | plastid | 64.46 | 67.7 |
TraesCS3B01G353500.1 | Wheat | plastid | 71.07 | 62.03 |
Os01t0785700-01 | Rice | mitochondrion | 56.49 | 57.14 |
EES01580 | Sorghum | mitochondrion | 53.08 | 53.08 |
Zm00001d012606_P001 | Maize | mitochondrion | 54.44 | 52.76 |
EES01579 | Sorghum | mitochondrion | 51.25 | 52.45 |
EER95222 | Sorghum | mitochondrion | 53.76 | 47.87 |
GSMUA_Achr10P... | Banana | mitochondrion | 41.23 | 45.14 |
VIT_00s0274g00040.t01 | Wine grape | mitochondrion | 32.12 | 36.91 |
VIT_00s0271g00080.t01 | Wine grape | mitochondrion | 29.84 | 36.09 |
VIT_00s0271g00040.t01 | Wine grape | cytosol | 16.63 | 35.78 |
KRH41973 | Soybean | nucleus | 30.07 | 34.65 |
VIT_00s0271g00050.t01 | Wine grape | mitochondrion | 17.77 | 34.36 |
VIT_00s0271g00070.t01 | Wine grape | mitochondrion | 29.61 | 34.3 |
Solyc03g031460.1.1 | Tomato | plastid | 28.93 | 33.51 |
PGSC0003DMT400012953 | Potato | cytosol | 28.93 | 33.51 |
KRH49916 | Soybean | cytosol | 30.3 | 33.25 |
Bra039373.1-P | Field mustard | cytosol | 20.73 | 33.21 |
CDY08267 | Canola | mitochondrion | 29.16 | 32.24 |
Bra037096.1-P | Field mustard | mitochondrion | 29.16 | 32.24 |
PGSC0003DMT400055888 | Potato | mitochondrion | 27.56 | 32.1 |
CDY26081 | Canola | mitochondrion | 28.93 | 32.07 |
CDY24208 | Canola | mitochondrion | 28.7 | 31.98 |
CDY43367 | Canola | mitochondrion | 28.25 | 31.47 |
AT1G55890.1 | Thale cress | mitochondrion | 28.25 | 31.16 |
PGSC0003DMT400055889 | Potato | plastid | 27.56 | 30.79 |
AT3G13160.1 | Thale cress | mitochondrion | 27.56 | 30.71 |
CDX82550 | Canola | mitochondrion | 27.33 | 30.53 |
Solyc02g079830.1.1 | Tomato | mitochondrion | 27.79 | 30.5 |
CDY66550 | Canola | mitochondrion | 20.73 | 30.43 |
Bra001492.1-P | Field mustard | mitochondrion | 27.33 | 30.0 |
Solyc02g079820.2.1 | Tomato | cytosol, plastid | 21.18 | 29.71 |
PGSC0003DMT400071165 | Potato | extracellular | 11.39 | 28.41 |
TraesCS3B01G355800.1 | Wheat | mitochondrion | 24.37 | 27.44 |
CDY43368 | Canola | plastid | 25.74 | 25.74 |
CDY24210 | Canola | plastid | 25.51 | 25.57 |
TraesCS6B01G473500.1 | Wheat | mitochondrion | 24.37 | 25.3 |
TraesCS1B01G176200.1 | Wheat | mitochondrion | 23.46 | 24.18 |
Bra039372.1-P | Field mustard | cytosol, plastid | 25.74 | 23.64 |
TraesCS6B01G260000.1 | Wheat | mitochondrion | 23.23 | 22.08 |
TraesCS7B01G136500.1 | Wheat | endoplasmic reticulum, plastid | 22.32 | 22.02 |
AT3G13150.1 | Thale cress | plastid | 25.97 | 20.69 |
Protein Annotations
EnsemblPlants:TraesCS3B01G361800.1 | EnsemblPlantsGene:TraesCS3B01G361800 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF1622 |
PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | SEG:seg | SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 |
MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:573467780..573469099
Molecular Weight (calculated)
48044.7 Da
IEP (calculated)
9.705
GRAVY (calculated)
-0.319
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLAAAAAA AAAAASTWVK SLSRIISSST PAVKPPKRNP KTKPAPPAAD ADSIADQKLT KPLGGVLKAL IREQDPDKLV SKFVEASSAS SRFRDGRRVY
101: DVAVSRLTSL GRKDGIEAII DAQKPFLETS TEGFATRLIR LYGSASMPSH AAATFHQLPA RHKSTMTFNA VLAAYAKAGD VDALTAAFQE IPAAHPSIVP
201: DLYSYNTLIR TLCQKSKLSA ALDAVHLMKK HGVSPDIITF NSLLDGFHNS GRNDEAEAVW EMIKERNMEP DAKCYNAKLR GLVAHGRIDD AAAVLERLEK
301: DGPKTNIVSY NELILGYCKA GRFQEAKKVY GNLMKNECVP NKGTYETLVP HLVQAGELDC ALRYCYEIFA NKKCCGVECG VLQDVVNALV NASRVKEATK
401: LVELGQKSNY HRKYYHLKLM RKNQYQKKRS VKVEDGTEK
101: DVAVSRLTSL GRKDGIEAII DAQKPFLETS TEGFATRLIR LYGSASMPSH AAATFHQLPA RHKSTMTFNA VLAAYAKAGD VDALTAAFQE IPAAHPSIVP
201: DLYSYNTLIR TLCQKSKLSA ALDAVHLMKK HGVSPDIITF NSLLDGFHNS GRNDEAEAVW EMIKERNMEP DAKCYNAKLR GLVAHGRIDD AAAVLERLEK
301: DGPKTNIVSY NELILGYCKA GRFQEAKKVY GNLMKNECVP NKGTYETLVP HLVQAGELDC ALRYCYEIFA NKKCCGVECG VLQDVVNALV NASRVKEATK
401: LVELGQKSNY HRKYYHLKLM RKNQYQKKRS VKVEDGTEK
001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.