CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24210	Canola	plastid	97.04	97.26
Bra039372.1-P	Field mustard	cytosol, plastid	97.49	89.54
AT3G13150.1	Thale cress	plastid	78.13	62.25
VIT_00s0271g00050.t01	Wine grape	mitochondrion	25.74	49.78
VIT_00s0271g00070.t01	Wine grape	mitochondrion	39.86	46.17
VIT_00s0271g00040.t01	Wine grape	cytosol	20.05	43.14
PGSC0003DMT400055889	Potato	plastid	35.99	40.2
Solyc02g079830.1.1	Tomato	mitochondrion	35.54	39.0
CDY66550	Canola	mitochondrion	26.42	38.8
CDY08267	Canola	mitochondrion	34.85	38.54
CDY26081	Canola	mitochondrion	34.62	38.38
CDY24208	Canola	mitochondrion	34.4	38.32
PGSC0003DMT400055888	Potato	mitochondrion	32.57	37.93
CDY43367	Canola	mitochondrion	33.94	37.82
CDX82550	Canola	mitochondrion	33.49	37.4
Solyc02g079820.2.1	Tomato	cytosol, plastid	25.51	35.78
PGSC0003DMT400071165	Potato	extracellular	12.3	30.68
CDX97972	Canola	cytosol	18.91	29.75
GSMUA_Achr10P...	Banana	mitochondrion	27.11	29.68
HORVU3Hr1G077400.1	Barley	cytosol	23.69	27.15
CDY54310	Canola	mitochondrion	24.15	27.11
CDY38649	Canola	mitochondrion	23.92	27.06
CDY57688	Canola	mitochondrion	23.92	26.85
CDY37572	Canola	mitochondrion	24.15	26.63
TraesCS3B01G353300.1	Wheat	plastid	25.06	26.32
EES01579	Sorghum	mitochondrion	25.51	26.11
Os01t0785700-01	Rice	mitochondrion	25.74	26.04
TraesCS3B01G361800.1	Wheat	plastid	25.74	25.74
CDY24774	Canola	mitochondrion	23.46	25.31
CDY35471	Canola	mitochondrion	23.46	25.31
CDY25328	Canola	mitochondrion, plastid	23.46	25.25
TraesCS3A01G324300.1	Wheat	plastid	24.83	25.23
Zm00001d012606_P001	Maize	mitochondrion	25.97	25.17
TraesCS3A01G331600.1	Wheat	plastid	26.2	25.05
CDY49792	Canola	plastid	23.23	25.0
CDY47165	Canola	mitochondrion	23.23	25.0
TraesCS3D01G325200.1	Wheat	plastid	25.06	24.5
EES01580	Sorghum	mitochondrion	24.37	24.37
TraesCS3A01G331700.1	Wheat	plastid	23.69	24.36
TraesCS3A01G324200.1	Wheat	plastid	24.83	23.96
TraesCS3D01G317700.1	Wheat	plastid	25.74	23.94
CDY66741	Canola	mitochondrion	22.78	23.87
CDY67618	Canola	mitochondrion	22.55	23.63
EER95222	Sorghum	mitochondrion	26.2	23.33
HORVU6Hr1G019320.1	Barley	plastid	24.15	22.84
TraesCS3A01G324500.1	Wheat	plastid	24.6	22.83
CDY07260	Canola	cytosol	7.74	22.22
HORVU3Hr1G077440.2	Barley	mitochondrion	24.15	21.59
TraesCS3B01G353500.1	Wheat	plastid	24.37	21.27
TraesCS3D01G317800.1	Wheat	plastid	23.69	20.68

Protein Annotations

EnsemblPlants:CDY43368	EnsemblPlantsGene:GSBRNA2T00076436001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1052
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY43368	ProteinID:CDY43368.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EF263E	UniProt:A0A078I2K8	MapMan:35.1	:	:

Description

BnaA01g29990DBnaA01g29990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2K8]

Coordinates

chrLK032554:+:83274..84593

Molecular Weight (calculated)

49591.5 Da

IEP (calculated)

9.333

GRAVY (calculated)

-0.526

Length

439 amino acids

Sequence
(BLAST)

001: MSKVGSSLYS RLHGIFKTQN PNQISTVKTT AKPRTQTKSK KFVNKSKKPT ASSASVAGGD AVTSSNDSKP TKDSNLTKKV EKFKRSCESQ SFRQVHGLYS
101: AFIRRLREAN KFSIIDEVLQ HQKKYDDIKS EDFVIRMMLL YGYSGMADHA HKLFDEMPEL NCERTNKSFN ALLSAYVNSR KVDEAMKVFK ELPEKLGITP
201: DLVTYNTMIK AVCRKGSMED ILSILEEVER NGLEPDMITF NTLLEEFYRR DLFAEGDRIW DLMKSKDLVP NIRSYNSRVR GLTRNKKFAD AVELTGVMRA
301: EGISPDVHTY NAFITGYRGD NNIEEALKWY DEMKENGLVP DTVTYCLLIP LVCKKGDLDR AVEMSEEAIR HKVLSRPNMY KPVIDGLVGE GKIDKAMQLV
401: KDGKLQSYFR YLPGLSTGKK DTATVPVSSS PVEASVGDE

Best Arabidopsis Sequence Match ( AT3G13150.1 )
(BLAST)

001: MSKVGSSLYS RLHGIFKESS IATAKSAKPR SQTKSTKFPS KLKASTASVG DGGQSSNDAK DSKNSKLTQK VEKFKRSCES ESFRQVHGLY SAFIRRLREA
101: KKFSTIDEVL QYQKKFDDIK SEDFVIRIML LYGYSGMAEH AHKLFDEMPE LNCERTVKSF NALLSAYVNS KKLDEAMKTF KELPEKLGIT PDLVTYNTMI
201: KALCRKGSMD DILSIFEELE KNGFEPDLIS FNTLLEEFYR RELFVEGDRI WDLMKSKNLS PNIRSYNSRV RGLTRNKKFT DALNLIDVMK TEGISPDVHT
301: YNALITAYRV DNNLEEVMKC YNEMKEKGLT PDTVTYCMLI PLLCKKGDLD RAVEVSEEAI KHKLLSRPNM YKPVVERLMG AGKIDEATQL VKNGKLQSYF
401: RYLPDLSAGK KKTTSSPVSS SAKTTSTPVS SSPDTSSFLL SLSLAADSSS SDSDSSSPDS SSSVSSSPDS SSSVSSSPDS YSSFSSSPDS SSSVSSSLFS
501: SSRENSSSPD YSNSVSSSLD YSGSVSSSSD YSSSVFPSAN SSSSSSGLLD D

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13150 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.