CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37572	Canola	mitochondrion	96.39	93.97
CDY57688	Canola	mitochondrion	88.14	87.47
CDY54310	Canola	mitochondrion	86.6	85.93
AT1G80150.1	Thale cress	mitochondrion	81.7	79.85
VIT_09s0002g06540.t01	Wine grape	mitochondrion	64.43	59.24
PGSC0003DMT400072924	Potato	mitochondrion	57.73	55.31
Zm00001d006609_P001	Maize	cytosol	42.01	52.24
Zm00001d014711_P001	Maize	cytosol	33.51	45.77
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	51.29	44.42
TraesCS7D01G240000.1	Wheat	endoplasmic reticulum, plastid	50.77	44.27
TraesCS7B01G136500.1	Wheat	endoplasmic reticulum, plastid	50.52	44.04
Os08t0499800-01	Rice	mitochondrion	50.26	44.02
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	50.52	43.65
Solyc05g012250.1.1	Tomato	mitochondrion	57.73	43.5
Zm00001d031321_P001	Maize	mitochondrion	51.29	43.36
EES15434	Sorghum	plastid	50.77	42.37
HORVU3Hr1G070290.2	Barley	mitochondrion	40.98	40.15
CDY07260	Canola	cytosol	11.86	30.07
CDY66550	Canola	mitochondrion	21.91	28.43
CDX97972	Canola	cytosol	20.1	27.96
CDY67618	Canola	mitochondrion	30.15	27.92
CDY26081	Canola	mitochondrion	28.35	27.78
CDY08267	Canola	mitochondrion	28.35	27.71
CDY24208	Canola	mitochondrion	28.09	27.66
CDY35471	Canola	mitochondrion	28.87	27.52
CDY24774	Canola	mitochondrion	28.61	27.27
CDY66741	Canola	mitochondrion	29.38	27.21
CDY47165	Canola	mitochondrion	28.61	27.21
CDY43367	Canola	mitochondrion	27.58	27.16
CDY25328	Canola	mitochondrion, plastid	28.35	26.96
CDX82550	Canola	mitochondrion	27.06	26.72
CDY49792	Canola	plastid	27.58	26.23
CDY24210	Canola	plastid	27.06	23.97
CDY43368	Canola	plastid	27.06	23.92

Protein Annotations

EnsemblPlants:CDY38649	EnsemblPlantsGene:GSBRNA2T00066358001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1623
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY38649	ProteinID:CDY38649.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EE9C69	UniProt:A0A078HMR9	MapMan:35.1	:	:

Description

BnaC02g23300DBnaC02g23300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMR9]

Coordinates

chrLK032429:+:4888..6185

Molecular Weight (calculated)

44310.6 Da

IEP (calculated)

9.920

GRAVY (calculated)

-0.139

Length

388 amino acids

Sequence
(BLAST)

001: MLSLRPIRRF CPSVATGVFA STLHVPAESN QEEEPALFKL KSERDPEKLF NLFKSNATNH LVIENRFAFQ DTVSRLAGAR RFDFIEDLLE HQKTLPQGRR
101: EGFIVRIIML YGKAGMTKHA LDTFYNMDSY GCKRTVKSFN AALKVLTLKP DLHTIQDFLL HAPSKYGVVM DAFSFNIAIK SVCDMGFLDK ASLVMKEMEK
201: SGLKPDVVTF TTLISAFYKH DRYVIGNGLW NHMVLKGCKP NLTTFNVRIQ FLVNRGRAWD ANDLLMLMPK LQMEPDNVTY NMVIKGFFVA GFPEMAERVY
301: TAMHGKGYKP NVKIYQTMIH YLCKAGKFDL GYTMCKDCMR KKWYPNLDTV GVLVDGLVKK GQLDQAKLIM ELVHKRVPPF SSKQLLPT

Best Arabidopsis Sequence Match ( AT1G80150.1 )
(BLAST)

001: MLSLRHIRRF CHFPSSAATG IAYVSTESNQ IQGLKPLEEP ALVKLKSERD PEKLYNLFKA NATNRLVIEN RFAFEDTVSR LAGAGRLDFI EDLLEHQKTL
101: PQGRREGFIV RIIMLYGKAG MTKQALDTFF NMDLYGCKRS VKSFNAALQV LSFNPDLHTI WEFLHDAPSK YGIDIDAVSF NIAIKSFCEL GILDGAYMAM
201: REMEKSGLTP DVVTYTTLIS ALYKHERCVI GNGLWNLMVL KGCKPNLTTF NVRIQFLVNR RRAWDANDLL LLMPKLQVEP DSITYNMVIK GFFLARFPDM
301: AERVYTAMHG KGYKPNLKIY QTMIHYLCKA GNFDLAYTMC KDCMRKKWYP NLDTVEMLLK GLVKKGQLDQ AKSIMELVHR RVPPFRSKQL LSLKSIL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g80150, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GW57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.