CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57688	Canola	mitochondrion	93.61	93.61
CDY38649	Canola	mitochondrion	85.93	86.6
CDY37572	Canola	mitochondrion	85.42	83.92
AT1G80150.1	Thale cress	mitochondrion	78.77	77.58
VIT_09s0002g06540.t01	Wine grape	mitochondrion	62.92	58.29
PGSC0003DMT400072924	Potato	mitochondrion	55.75	53.83
Zm00001d006609_P001	Maize	cytosol	42.2	52.88
Zm00001d014711_P001	Maize	cytosol	33.76	46.48
TraesCS7D01G240000.1	Wheat	endoplasmic reticulum, plastid	51.92	45.62
Os08t0499800-01	Rice	mitochondrion	51.66	45.6
TraesCS7B01G136500.1	Wheat	endoplasmic reticulum, plastid	51.66	45.39
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	51.92	45.31
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	51.41	44.77
Zm00001d031321_P001	Maize	mitochondrion	51.66	44.01
EES15434	Sorghum	plastid	51.41	43.23
Solyc05g012250.1.1	Tomato	mitochondrion	55.5	42.14
HORVU3Hr1G070290.2	Barley	mitochondrion	41.43	40.91
CDY07260	Canola	cytosol	11.51	29.41
CDX97972	Canola	cytosol	20.46	28.67
CDY66550	Canola	mitochondrion	21.74	28.43
CDY67618	Canola	mitochondrion	30.43	28.4
CDY66741	Canola	mitochondrion	29.67	27.68
CDY49792	Canola	plastid	28.64	27.45
CDY47165	Canola	mitochondrion	28.13	26.96
CDY24208	Canola	mitochondrion	27.11	26.9
CDY24774	Canola	mitochondrion	27.88	26.78
CDY25328	Canola	mitochondrion, plastid	27.88	26.72
CDY35471	Canola	mitochondrion	27.62	26.54
CDY26081	Canola	mitochondrion	26.85	26.52
CDY08267	Canola	mitochondrion	26.85	26.45
CDY43367	Canola	mitochondrion	26.6	26.4
CDX82550	Canola	mitochondrion	26.34	26.21
CDY24210	Canola	plastid	27.11	24.2
CDY43368	Canola	plastid	27.11	24.15

Protein Annotations

EnsemblPlants:CDY54310	EnsemblPlantsGene:GSBRNA2T00013798001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1623
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY54310	ProteinID:CDY54310.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EC18EE	UniProt:A0A078IT39	MapMan:35.1	:	:

Description

BnaC06g43080DBnaC06g43080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IT39]

Coordinates

chrLK033301:+:19934..21109

Molecular Weight (calculated)

44384.7 Da

IEP (calculated)

10.190

GRAVY (calculated)

-0.135

Length

391 amino acids

Sequence
(BLAST)

001: MLSLPPTRRF FFRSCSSIAT TVASIPAKPN QKEPAPALVK LKSERDPEKL FNLFKSNATN SLVIENRFAF QDTVSRLAGA RRFDYIEALL EHQKTLPQGR
101: REGFVVRIIM LYGKAGMTKH ALDTFHNMDT SKRTVKSFNA ALKVLSLKPE LHTIQDFLGH VPFKYGVEMD AVSFNIAIKS LCEMGFLDKA SLAMNEMEKS
201: GLKPDVVTYT TLISAFYKQD RYVVGNGLWN HMVLKGCRPN LTTFNVRIQF LVNRGRAWDA NDLLLLMPKL QMEPDSLTYN MVIKGFFVAG FPEMAERVYT
301: AMHGKGCKPN VKIYQTMIHY LCKAGKFDLG YTMCKDCMRK KWYPNLDTVG VLLDGLVKKG QLDQAKLIMG LVRKRVPPYS SKQLLSLESI F

Best Arabidopsis Sequence Match ( AT1G80150.1 )
(BLAST)

001: MLSLRHIRRF CHFPSSAATG IAYVSTESNQ IQGLKPLEEP ALVKLKSERD PEKLYNLFKA NATNRLVIEN RFAFEDTVSR LAGAGRLDFI EDLLEHQKTL
101: PQGRREGFIV RIIMLYGKAG MTKQALDTFF NMDLYGCKRS VKSFNAALQV LSFNPDLHTI WEFLHDAPSK YGIDIDAVSF NIAIKSFCEL GILDGAYMAM
201: REMEKSGLTP DVVTYTTLIS ALYKHERCVI GNGLWNLMVL KGCKPNLTTF NVRIQFLVNR RRAWDANDLL LLMPKLQVEP DSITYNMVIK GFFLARFPDM
301: AERVYTAMHG KGYKPNLKIY QTMIHYLCKA GNFDLAYTMC KDCMRKKWYP NLDTVEMLLK GLVKKGQLDQ AKSIMELVHR RVPPFRSKQL LSLKSIL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g80150, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GW57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.