CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43368	Canola	plastid	97.26	97.04
Bra039372.1-P	Field mustard	cytosol, plastid	95.66	87.66
AT3G13150.1	Thale cress	plastid	78.08	62.07
VIT_00s0271g00050.t01	Wine grape	mitochondrion	25.8	49.78
VIT_00s0271g00070.t01	Wine grape	mitochondrion	39.73	45.91
VIT_00s0271g00040.t01	Wine grape	cytosol	19.86	42.65
PGSC0003DMT400055889	Potato	plastid	35.84	39.95
CDY66550	Canola	mitochondrion	26.48	38.8
Solyc02g079830.1.1	Tomato	mitochondrion	35.39	38.75
CDY08267	Canola	mitochondrion	34.7	38.29
CDY26081	Canola	mitochondrion	34.47	38.13
CDY24208	Canola	mitochondrion	34.25	38.07
CDY43367	Canola	mitochondrion	33.79	37.56
CDX82550	Canola	mitochondrion	33.33	37.15
PGSC0003DMT400055888	Potato	mitochondrion	31.96	37.14
Solyc02g079820.2.1	Tomato	cytosol, plastid	25.11	35.14
PGSC0003DMT400071165	Potato	extracellular	12.33	30.68
GSMUA_Achr10P...	Banana	mitochondrion	27.17	29.68
CDX97972	Canola	cytosol	18.72	29.39
HORVU3Hr1G077400.1	Barley	cytosol	23.74	27.15
CDY54310	Canola	mitochondrion	24.2	27.11
CDY38649	Canola	mitochondrion	23.97	27.06
CDY57688	Canola	mitochondrion	23.74	26.6
CDY37572	Canola	mitochondrion	23.97	26.38
TraesCS3B01G353300.1	Wheat	plastid	25.11	26.32
EES01579	Sorghum	mitochondrion	25.57	26.11
Os01t0785700-01	Rice	mitochondrion	25.8	26.04
TraesCS3B01G361800.1	Wheat	plastid	25.57	25.51
TraesCS3A01G324300.1	Wheat	plastid	24.89	25.23
Zm00001d012606_P001	Maize	mitochondrion	26.03	25.17
CDY24774	Canola	mitochondrion	23.29	25.06
CDY35471	Canola	mitochondrion	23.29	25.06
CDY25328	Canola	mitochondrion, plastid	23.29	25.0
TraesCS3A01G331600.1	Wheat	plastid	26.03	24.84
CDY47165	Canola	mitochondrion	23.06	24.75
CDY49792	Canola	plastid	23.06	24.75
TraesCS3D01G325200.1	Wheat	plastid	25.11	24.5
EES01580	Sorghum	mitochondrion	24.43	24.37
TraesCS3A01G331700.1	Wheat	plastid	23.74	24.36
TraesCS3A01G324200.1	Wheat	plastid	24.89	23.96
TraesCS3D01G317700.1	Wheat	plastid	25.8	23.94
CDY66741	Canola	mitochondrion	22.6	23.63
EER95222	Sorghum	mitochondrion	26.48	23.53
CDY67618	Canola	mitochondrion	22.37	23.39
HORVU6Hr1G019320.1	Barley	plastid	24.43	23.06
TraesCS3A01G324500.1	Wheat	plastid	24.66	22.83
CDY07260	Canola	cytosol	7.76	22.22
HORVU3Hr1G077440.2	Barley	mitochondrion	24.2	21.59
TraesCS3B01G353500.1	Wheat	plastid	24.43	21.27
TraesCS3D01G317800.1	Wheat	plastid	23.74	20.68

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078GCI9	EnsemblPlants:CDY24210	ProteinID:CDY24210	ProteinID:CDY24210.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00026313001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1052	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EF4078	SEG:seg	:	:

Description

BnaC01g37900DBnaC01g37900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCI9]

Coordinates

chrLK032155:+:268851..270297

Molecular Weight (calculated)

49434.4 Da

IEP (calculated)

9.220

GRAVY (calculated)

-0.495

Length

438 amino acids

Sequence
(BLAST)

001: MSKVGSSLYT RLHGIFKESP ISTVKTTAKP RTQTKSNKFV KKSKKPTASP ASASVAGGDA VMSSNDSKPT KDSNLTKKVE KFKRSCESQS FRQVHGLYSA
101: FIRRLREANK FSIIDEVLQH QKKYEDIKSE DFVIRMMLLY GYSGMADHAH KLFDEMPELN CERTNKSFNA LLSAYVNSRK VDEAMKVFKE LPEKLGITPD
201: LVTYNTMIKA VCRKGSMEDI LSILEEVERN GLEPDMITFN TLLEEFYRRD LFAEGDRIWD LMKSKDLVPN IRSYNSRVRG LTRNKKFADA VELTGVMRAE
301: GISPDVHTYN AFITGYRGDN NIEEALKWYD EMKENGLVPD TVTYCLLIPL VCKKGDLDRA VEMSEEAIRH KVLSRPNMYK PVIDGLVGEG KIDKAMQLVK
401: DGKLQSYFRY LPGVSTGKKD TATVPVSSSP VEASVGDE

Best Arabidopsis Sequence Match ( AT3G13150.1 )
(BLAST)

001: MSKVGSSLYS RLHGIFKESS IATAKSAKPR SQTKSTKFPS KLKASTASVG DGGQSSNDAK DSKNSKLTQK VEKFKRSCES ESFRQVHGLY SAFIRRLREA
101: KKFSTIDEVL QYQKKFDDIK SEDFVIRIML LYGYSGMAEH AHKLFDEMPE LNCERTVKSF NALLSAYVNS KKLDEAMKTF KELPEKLGIT PDLVTYNTMI
201: KALCRKGSMD DILSIFEELE KNGFEPDLIS FNTLLEEFYR RELFVEGDRI WDLMKSKNLS PNIRSYNSRV RGLTRNKKFT DALNLIDVMK TEGISPDVHT
301: YNALITAYRV DNNLEEVMKC YNEMKEKGLT PDTVTYCMLI PLLCKKGDLD RAVEVSEEAI KHKLLSRPNM YKPVVERLMG AGKIDEATQL VKNGKLQSYF
401: RYLPDLSAGK KKTTSSPVSS SAKTTSTPVS SSPDTSSFLL SLSLAADSSS SDSDSSSPDS SSSVSSSPDS SSSVSSSPDS YSSFSSSPDS SSSVSSSLFS
501: SSRENSSSPD YSNSVSSSLD YSGSVSSSSD YSSSVFPSAN SSSSSSGLLD D

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13150 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.