Factsheet for HORVU3Hr1G077400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G082590.15
HORVU6Hr1G053250.1
HORVU6Hr1G069310.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT1G55890.1	HORVU2Hr1G082590.15	AT4G24690.1	21798944
AT1G55890.1	HORVU6Hr1G053250.1	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G353300.1	Wheat	plastid	81.46	74.64
TraesCS3A01G324200.1	Wheat	plastid	85.64	72.09
TraesCS3D01G317700.1	Wheat	plastid	88.25	71.61
TraesCS3A01G324300.1	Wheat	plastid	78.59	69.68
HORVU3Hr1G077440.2	Barley	mitochondrion	85.12	66.4
HORVU6Hr1G019320.1	Barley	plastid	70.23	57.97
Os01t0785700-01	Rice	mitochondrion	62.14	54.84
EES01580	Sorghum	mitochondrion	60.84	53.08
Zm00001d012606_P001	Maize	mitochondrion	61.62	52.1
EES01579	Sorghum	mitochondrion	57.18	51.05
EER95222	Sorghum	mitochondrion	61.88	48.07
GSMUA_Achr10P...	Banana	mitochondrion	47.0	44.89
VIT_00s0271g00040.t01	Wine grape	cytosol	20.1	37.75
VIT_00s0271g00070.t01	Wine grape	mitochondrion	35.51	35.88
VIT_00s0274g00040.t01	Wine grape	mitochondrion	35.77	35.86
VIT_00s0271g00050.t01	Wine grape	mitochondrion	21.15	35.68
VIT_00s0271g00080.t01	Wine grape	mitochondrion	33.16	34.99
Bra039373.1-P	Field mustard	cytosol	24.54	34.31
PGSC0003DMT400012953	Potato	cytosol	33.94	34.3
Solyc03g031460.1.1	Tomato	plastid	33.42	33.77
CDY26081	Canola	mitochondrion	33.42	32.32
KRH41973	Soybean	nucleus	31.85	32.02
Bra037096.1-P	Field mustard	mitochondrion	33.16	31.99
CDY08267	Canola	mitochondrion	33.16	31.99
PGSC0003DMT400071165	Potato	extracellular	14.62	31.82
AT1G55890.1	Thale cress	mitochondrion	32.9	31.66
CDX82550	Canola	mitochondrion	32.11	31.3
CDY24208	Canola	mitochondrion	32.11	31.22
AT3G13160.1	Thale cress	mitochondrion	31.85	30.96
CDY43367	Canola	mitochondrion	31.85	30.96
KRH49916	Soybean	cytosol	31.85	30.5
Bra001492.1-P	Field mustard	mitochondrion	31.85	30.5
CDY66550	Canola	mitochondrion	23.76	30.43
PGSC0003DMT400055889	Potato	plastid	31.07	30.28
Solyc02g079830.1.1	Tomato	mitochondrion	31.59	30.25
PGSC0003DMT400055888	Potato	mitochondrion	29.5	29.97
Solyc02g079820.2.1	Tomato	cytosol, plastid	21.93	26.84
HORVU3Hr1G077780.1	Barley	mitochondrion	24.54	24.1
HORVU2Hr1G030800.1	Barley	cytosol, extracellular	14.62	24.03
CDY24210	Canola	plastid	27.15	23.74
CDY43368	Canola	plastid	27.15	23.69
HORVU6Hr1G059290.1	Barley	cytosol	28.2	22.45
HORVU6Hr1G094400.1	Barley	plastid	25.07	22.12
Bra039372.1-P	Field mustard	cytosol, plastid	27.15	21.76
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	24.28	20.71
HORVU1Hr1G042520.2	Barley	mitochondrion	24.28	20.67
HORVU5Hr1G041750.1	Barley	cytosol	19.06	20.56
HORVU3Hr1G070290.2	Barley	mitochondrion	20.63	19.95
HORVU6Hr1G047990.1	Barley	cytosol, mitochondrion, plastid	20.37	19.95
HORVU5Hr1G013060.2	Barley	cytosol, mitochondrion, plastid	20.37	19.95
HORVU3Hr1G101970.1	Barley	cytosol	9.4	19.67
AT3G13150.1	Thale cress	plastid	27.68	19.24

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A287LSJ6	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:HORVU3Hr1G077400	EnsemblPlants:HORVU3Hr1G077400.1	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B484402	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:572947680..572949672

Molecular Weight (calculated)

42941.8 Da

IEP (calculated)

5.154

GRAVY (calculated)

-0.459

Length

383 amino acids

Sequence
(BLAST)

001: MAIIRQRDPD KLVSDFVQAS TVSSRFRDRQ RVYEVAVSRL TSFGRQDAIE TILEAQKPFL ETSTEGFATR LIRLYGRASM PSHAAATFHE LPAHHKSTMT
101: FNSVLSAYAE AGDFDRLTAA FQEIPATHPS IVPSVSSYNI LIRALCQKSD ISAALDTVLL MEKQGVTPDI ITFNTLLNGF CNNGHTDEAE TVWEMMKERN
201: LEPDAKCYNA KLRGLVAQGR IDDAAAVLER LEKDGPKPDT VSYNEMVRGY LKEGRLQEAK KLYDDLVKNQ CAANKGTYET LVPHLLQAGD LDCALRYCYE
301: MFSGKRSCRV ECDVLQDVVN ALVDASRVEE AAKLVELGRK KYYSRKGLRM PDSTKGSELR AETDEEEAIS EEKECETEHE AEK

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.