Factsheet for HORVU2Hr1G030800.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	cytosol
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G101970.1	Barley	cytosol	60.94	77.6
HORVU5Hr1G013060.2	Barley	cytosol, mitochondrion, plastid	90.56	53.96
HORVU6Hr1G047990.1	Barley	cytosol, mitochondrion, plastid	90.56	53.96
HORVU6Hr1G094400.1	Barley	plastid	86.27	46.31
TraesCS6B01G473500.1	Wheat	mitochondrion	83.26	45.86
TraesCS6D01G401100.1	Wheat	mitochondrion	81.55	44.92
Os02t0829800-01	Rice	mitochondrion	64.38	35.46
EES07814	Sorghum	mitochondrion, plastid	63.52	35.32
Zm00001d018534_P001	Maize	mitochondrion	62.66	34.84
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	36.48	31.02
HORVU1Hr1G042520.2	Barley	mitochondrion	35.62	18.44
VIT_01s0010g01460.t01	Wine grape	mitochondrion	29.18	17.62
HORVU5Hr1G041750.1	Barley	cytosol	22.75	14.93
HORVU3Hr1G077400.1	Barley	cytosol	24.03	14.62
HORVU3Hr1G077780.1	Barley	mitochondrion	24.46	14.62
HORVU6Hr1G019320.1	Barley	plastid	26.61	13.36
HORVU3Hr1G077440.2	Barley	mitochondrion	25.75	12.22
HORVU3Hr1G070290.2	Barley	mitochondrion	20.17	11.87
HORVU6Hr1G059290.1	Barley	cytosol	23.61	11.43
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	20.17	10.47

Protein Annotations

EnsemblPlants:HORVU2Hr1G030800.1	EnsemblPlantsGene:HORVU2Hr1G030800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF518
PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI000B47B577	UniProt:A0A287HK92
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:114263586..114264828

Molecular Weight (calculated)

24903.2 Da

IEP (calculated)

5.752

GRAVY (calculated)

0.093

Length

233 amino acids

Sequence
(BLAST)

001: MPTHSLSTFQ LVVSPSDHAL SALLAAYYDA GQPARAIQAF RDLSVELSIE PGVVSHNVLL KCMVATEDVV GARQVFDGMT DKAELQPGIV SCNEMLKGYL
101: KRGDYAAFDL LLKEVTGGKR RLKPNVITYK LRMSGLCAKG GSFEAEEMLE AMAANGVPPN SECFNTIIGG LCNEGEVGAA VALFKRTPEV PRPNGKGVSP
201: NFETYIILIK ALVENNAFVP TLQQVGVAVP GCQ

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.