Factsheet for HORVU3Hr1G101970.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G030800.1	Barley	cytosol, extracellular	77.6	60.94
HORVU5Hr1G013060.2	Barley	cytosol, mitochondrion, plastid	96.72	45.27
HORVU6Hr1G047990.1	Barley	cytosol, mitochondrion, plastid	96.72	45.27
HORVU6Hr1G094400.1	Barley	plastid	79.78	33.64
TraesCS6B01G473500.1	Wheat	mitochondrion	77.05	33.33
TraesCS6D01G401100.1	Wheat	mitochondrion	75.96	32.86
EES07814	Sorghum	mitochondrion, plastid	62.3	27.21
Zm00001d018534_P001	Maize	mitochondrion	61.2	26.73
Os02t0829800-01	Rice	mitochondrion	60.11	26.0
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	37.7	25.18
HORVU1Hr1G042520.2	Barley	mitochondrion	35.52	14.44
VIT_01s0010g01460.t01	Wine grape	mitochondrion	27.32	12.95
HORVU3Hr1G077780.1	Barley	mitochondrion	23.5	11.03
HORVU3Hr1G070290.2	Barley	mitochondrion	21.86	10.1
HORVU5Hr1G041750.1	Barley	cytosol	19.13	9.86
HORVU3Hr1G077400.1	Barley	cytosol	19.67	9.4
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	21.86	8.91
HORVU6Hr1G019320.1	Barley	plastid	22.4	8.84
HORVU6Hr1G059290.1	Barley	cytosol	20.77	7.9
HORVU3Hr1G077440.2	Barley	mitochondrion	20.77	7.74

Protein Annotations

EnsemblPlants:HORVU3Hr1G101970.1	EnsemblPlantsGene:HORVU3Hr1G101970	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF518
PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI000B47A3C2	UniProt:A0A287MI47
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:664568075..664569488

Molecular Weight (calculated)

19684.6 Da

IEP (calculated)

4.650

GRAVY (calculated)

-0.249

Length

183 amino acids

Sequence
(BLAST)

001: MTDKAGLQPD IVSCNEMLKG YLKTGDYAAF DLLLKEVTGG KRRLKPNVTT YKLRMSGLCA KGRSFEAEEL LEAMAANGVP PNWECFNTVI GELCNEGEVG
101: AAVALFKRMP EVPRPNGKGV SPNFETYIIL IEALVENNAF VPALQQVGAA VPGCQGSDLR AGQEQEGEAC QGARHGNEEF CQG

Best Arabidopsis Sequence Match ( AT5G64320.1 )
(BLAST)

001: MVMLARSKLA LDVSRRSQSL QRICYYASLS SRFSGGGGDD GGGSSPEIGG TDSANEWEKL LKPFDLDSLR NSFHKITPFQ LYKLLELPLN VSTSMELFSW
101: TGSQNGYRHS FDVYQVLIGK LGANGEFKTI DRLLIQMKDE GIVFKESLFI SIMRDYDKAG FPGQTTRLML EMRNVYSCEP TFKSYNVVLE ILVSGNCHKV
201: AANVFYDMLS RKIPPTLFTF GVVMKAFCAV NEIDSALSLL RDMTKHGCVP NSVIYQTLIH SLSKCNRVNE ALQLLEEMFL MGCVPDAETF NDVILGLCKF
301: DRINEAAKMV NRMLIRGFAP DDITYGYLMN GLCKIGRVDA AKDLFYRIPK PEIVIFNTLI HGFVTHGRLD DAKAVLSDMV TSYGIVPDVC TYNSLIYGYW
401: KEGLVGLALE VLHDMRNKGC KPNVYSYTIL VDGFCKLGKI DEAYNVLNEM SADGLKPNTV GFNCLISAFC KEHRIPEAVE IFREMPRKGC KPDVYTFNSL
501: ISGLCEVDEI KHALWLLRDM ISEGVVANTV TYNTLINAFL RRGEIKEARK LVNEMVFQGS PLDEITYNSL IKGLCRAGEV DKARSLFEKM LRDGHAPSNI
601: SCNILINGLC RSGMVEEAVE FQKEMVLRGS TPDIVTFNSL INGLCRAGRI EDGLTMFRKL QAEGIPPDTV TFNTLMSWLC KGGFVYDACL LLDEGIEDGF
701: VPNHRTWSIL LQSIIPQETL DRRRFYNAAF

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.