Factsheet for VIT_01s0010g01460.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	28.24	39.78
TraesCS1A01G160400.1	Wheat	cytosol	19.95	35.16
EES07814	Sorghum	mitochondrion, plastid	38.08	35.08
Zm00001d018534_P001	Maize	mitochondrion	38.08	35.08
Os02t0829800-01	Rice	mitochondrion	38.34	34.99
VIT_10s0116g00030.t01	Wine grape	plastid	33.16	32.32
TraesCS6B01G473500.1	Wheat	mitochondrion	34.97	31.91
TraesCS6D01G401100.1	Wheat	mitochondrion	34.2	31.21
Os10t0484900-00	Rice	mitochondrion	34.2	30.84
HORVU6Hr1G094400.1	Barley	plastid	34.2	30.41
TraesCS1B01G176200.1	Wheat	mitochondrion	33.42	30.28
EER91465	Sorghum	mitochondrion	34.46	30.23
Zm00001d032661_P001	Maize	mitochondrion	33.42	29.45
HORVU1Hr1G042520.2	Barley	mitochondrion	34.2	29.33
HORVU2Hr1G030800.1	Barley	cytosol, extracellular	17.62	29.18
VIT_00s0271g00040.t01	Wine grape	cytosol	15.03	28.43
VIT_00s0271g00080.t01	Wine grape	mitochondrion	26.17	27.82
VIT_00s0274g00040.t01	Wine grape	mitochondrion	27.46	27.75
HORVU3Hr1G101970.1	Barley	cytosol	12.95	27.32
VIT_00s0271g00070.t01	Wine grape	mitochondrion	26.17	26.65
VIT_10s0116g00090.t01	Wine grape	mitochondrion	17.36	26.27
VIT_09s0002g06540.t01	Wine grape	mitochondrion	27.2	24.88
VIT_04s0023g01460.t01	Wine grape	mitochondrion	26.68	24.88
VIT_00s0271g00050.t01	Wine grape	mitochondrion	14.51	24.67
Zm00001d013990_P001	Maize	mitochondrion, plastid	16.06	24.41
HORVU5Hr1G013060.2	Barley	cytosol, mitochondrion, plastid	24.09	23.79
HORVU6Hr1G047990.1	Barley	cytosol, mitochondrion, plastid	24.09	23.79

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100244449	wikigene:100244449	MapMan:35.1	ProteinID:CBI27462	ProteinID:CBI27462.3
ncoils:Coil	UniProt:D7TAD9	EMBL:FN595754	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100244449	wikigene:LOC100244449	PFAM:PF01535	PFAM:PF13041
PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF518	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00019829D2	ArrayExpress:VIT_01s0010g01460	EnsemblPlantsGene:VIT_01s0010g01460	EnsemblPlants:VIT_01s0010g01460.t01
RefSeq:XP_002272104	RefSeq:XP_002272104.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:17594007..17595367

Molecular Weight (calculated)

44050.6 Da

IEP (calculated)

9.038

GRAVY (calculated)

-0.308

Length

386 amino acids

Sequence
(BLAST)

001: MASLCRIPRR LLSLARFSTL SDPFTTFLAA KSAVESEPDP EKLAHIFHHQ SSNFARFRRH RPLYQLSCRR LSRSGRLDLV ERLIDHQKTL PHPRTEGFWI
101: RLIMLYSTSG MVDHALRTFH QMVQDRVQLT EKSLCAILTV YLDNDLIDQL HTVFNTMPSE IGVSPGTKSY SLVLKAFCQQ KDMESARKLL HKMENPDIGS
201: YNVLLEAYSE NGDGVEFDEI LKEIKNKGLE HDCTTYNHRI LRFCKNKESV RAKKLLDEMV AKGVKPNSAS YNMIIHGFCK VGDFESAQKV LGRMLADGYV
301: APCSISYITL FQHMVKEGEF DSALNMCKEI IRRKWVPPFE AMDGLVKGLV EISKVEAAKE VVEKMKKRLK GNAADSWKTH EAALPL

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.