Factsheet for GSMUA_Achr9P20670_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G160400.1	Wheat	cytosol	34.31	42.92
HORVU3Hr1G101970.1	Barley	cytosol	25.18	37.7
HORVU2Hr1G030800.1	Barley	cytosol, extracellular	31.02	36.48
Zm00001d018534_P001	Maize	mitochondrion	48.54	31.74
Os10t0484900-00	Rice	mitochondrion	49.27	31.54
TraesCS6B01G473500.1	Wheat	mitochondrion	47.81	30.97
TraesCS6D01G401100.1	Wheat	mitochondrion	47.45	30.73
Os02t0829800-01	Rice	mitochondrion	47.45	30.73
EES07814	Sorghum	mitochondrion, plastid	46.35	30.31
TraesCS1B01G176200.1	Wheat	mitochondrion	46.72	30.05
HORVU6Hr1G094400.1	Barley	plastid	47.08	29.72
Zm00001d032661_P001	Maize	mitochondrion	47.45	29.68
EER91465	Sorghum	mitochondrion	47.08	29.32
VIT_01s0010g01460.t01	Wine grape	mitochondrion	39.78	28.24
HORVU1Hr1G042520.2	Barley	mitochondrion	45.62	27.78
GSMUA_Achr11P...	Banana	cytosol	18.98	26.67
GSMUA_Achr6P00410_001	Banana	mitochondrion	29.93	23.3
HORVU6Hr1G047990.1	Barley	cytosol, mitochondrion, plastid	33.21	23.27
HORVU5Hr1G013060.2	Barley	cytosol, mitochondrion, plastid	33.21	23.27
Zm00001d013990_P001	Maize	mitochondrion, plastid	17.52	18.9
GSMUA_Achr10P...	Banana	mitochondrion	26.28	17.96
GSMUA_Achr1P01950_001	Banana	mitochondrion	21.9	15.54

Protein Annotations

EnsemblPlants:GSMUA_Achr9P20670_001	EnsemblPlants:GSMUA_Achr9T20670_001	EnsemblPlantsGene:GSMUA_Achr9G20670_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	UniParc:UPI000295AD10	UniProt:M0U226
MapMan:35.1	:	:	:	:	:

Description

Putative Pentatricopeptide repeat-containing protein At1g11630, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr9G20670_001]

Coordinates

chr9:+:24791929..24793926

Molecular Weight (calculated)

30796.1 Da

IEP (calculated)

5.642

GRAVY (calculated)

-0.337

Length

274 amino acids

Sequence
(BLAST)

001: MPGLGCRRTD RSLCALLSAF LKNDCVDRLQ DVFDRAAVEF GIAPGIASYN VLLRALCSID EVEKARALLD EMPDKGVEPD IICYNTVLEG YLKKGDYSGF
101: DEFLKEFNRK KFSPNVGTFN CRIAALCAQG KSFQAEELLD VMQSKTIQPN RLSFNTLIDG FCKEGNMDSA MKVFERMKGF KRPDDTRVSP DFKTYTTLLE
201: DLVEKEEFGK GVEICKECLK KKWAPPFETV KGLIDGLVKS SRVNEAKDVI SRMGKGIQGD ARDAWKKIEE SFSL

Best Arabidopsis Sequence Match ( AT1G11630.1 )
(BLAST)

001: MAFLFRIRTS EFILQKATQF RLKSSSSSIF TLKSLTSKQK KSRDTLSLLK SENNPDRILE ICRSTSLSPD YHVDRIIFSV AVVTLAREKH FVAVSQLLDG
101: FIQNQPDPKS ESFAVRAIIL YGRANMLDRS IQTFRNLEQY EIPRTVKSLN ALLFACLMAK DYKEANRVYL EMPKMYGIEP DLETYNRMIR VLCESGSTSS
201: SYSIVAEMER KWIKPTAASF GLMIDGFYKE EKFDEVRKVM RMMDEFGVHV GVATYNIMIQ CLCKRKKSAE AKALIDGVMS CRMRPNSVTY SLLIHGFCSE
301: ENLDEAMNLF EVMVCNGYKP DSECYFTLIH CLCKGGDFET ALILCRESME KNWVPSFSVM KWLVNGLASR SKVDEAKELI AVVKEKFTRN VDLWNEVEAA
401: LPLPQ

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g11630, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAB4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.