Factsheet for HORVU1Hr1G042520.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G160400.1	Wheat	cytosol	46.89	96.35
TraesCS1B01G176200.1	Wheat	mitochondrion	90.22	95.31
Os10t0484900-00	Rice	mitochondrion	75.78	79.67
Zm00001d032661_P001	Maize	mitochondrion	73.56	75.57
EER91465	Sorghum	mitochondrion	73.33	75.0
Zm00001d013990_P001	Maize	mitochondrion, plastid	37.33	66.14
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	27.78	45.62
HORVU6Hr1G094400.1	Barley	plastid	34.89	36.18
HORVU2Hr1G030800.1	Barley	cytosol, extracellular	18.44	35.62
HORVU3Hr1G101970.1	Barley	cytosol	14.44	35.52
VIT_01s0010g01460.t01	Wine grape	mitochondrion	29.33	34.2
HORVU5Hr1G013060.2	Barley	cytosol, mitochondrion, plastid	25.56	29.41
HORVU6Hr1G047990.1	Barley	cytosol, mitochondrion, plastid	25.56	29.41
HORVU3Hr1G077780.1	Barley	mitochondrion	22.44	25.9
HORVU3Hr1G077400.1	Barley	cytosol	20.67	24.28
HORVU6Hr1G059290.1	Barley	cytosol	25.33	23.7
HORVU6Hr1G019320.1	Barley	plastid	23.33	22.63
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	21.33	21.38
HORVU3Hr1G077440.2	Barley	mitochondrion	23.11	21.18
HORVU3Hr1G070290.2	Barley	mitochondrion	17.33	19.7
HORVU5Hr1G041750.1	Barley	cytosol	14.67	18.59

Protein Annotations

EnsemblPlants:HORVU1Hr1G042520.2	EnsemblPlantsGene:HORVU1Hr1G042520	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF559
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI000B46C6D2	UniProt:A0A287FAQ3	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:308777491..308779294

Molecular Weight (calculated)

48786.9 Da

IEP (calculated)

10.148

GRAVY (calculated)

-0.168

Length

450 amino acids

Sequence
(BLAST)

001: PQRHKRKAQT LANPVLAHSP ITMASLLPRR PPPPSAVSAH LLRRLSALAD VDPSPASAPA PGRAAVRASI IDLQLAVRAE TDPDRVHSLV ASALSSPDYH
101: RLHTSRALFS LAASRLDRLR RPDLAASLLD QLLASAPVSP GLLARALSLF PGPDDAVRAF SSSAPAARSD VSLSALLSAL LRAGRIDDLK STFKSAESSL
201: GVAPGSASHN VLLHTLVKSS DLPAARKLLN EMAKKKFKHR PPPDIISYNT LLAGFSEQDD VEEFEKLLKE INENKLEPNV VTYNCRMHWF ARKGETFKGE
301: ELLDVMESKG VLPNYVTYNA LVQGYCKEGN VGAAMRVFKR MKVMKRREGR SDLGVSVHSQ TYVLLFRTLV EKERLDDALW LCNSCFAMKA APSFEAVKGL
401: VEGLVKGGRS AEAKAVVAKM NFLVKGDAKV SWEKIAGELS LEEGAPSSNP

Best Arabidopsis Sequence Match ( AT1G11630.1 )
(BLAST)

001: MAFLFRIRTS EFILQKATQF RLKSSSSSIF TLKSLTSKQK KSRDTLSLLK SENNPDRILE ICRSTSLSPD YHVDRIIFSV AVVTLAREKH FVAVSQLLDG
101: FIQNQPDPKS ESFAVRAIIL YGRANMLDRS IQTFRNLEQY EIPRTVKSLN ALLFACLMAK DYKEANRVYL EMPKMYGIEP DLETYNRMIR VLCESGSTSS
201: SYSIVAEMER KWIKPTAASF GLMIDGFYKE EKFDEVRKVM RMMDEFGVHV GVATYNIMIQ CLCKRKKSAE AKALIDGVMS CRMRPNSVTY SLLIHGFCSE
301: ENLDEAMNLF EVMVCNGYKP DSECYFTLIH CLCKGGDFET ALILCRESME KNWVPSFSVM KWLVNGLASR SKVDEAKELI AVVKEKFTRN VDLWNEVEAA
401: LPLPQ

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g11630, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAB4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.