CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032661_P001	Maize	mitochondrion	93.41	93.84
Os10t0484900-00	Rice	mitochondrion	79.55	81.78
TraesCS1A01G160400.1	Wheat	cytosol	40.0	80.37
TraesCS1B01G176200.1	Wheat	mitochondrion	75.68	78.17
Zm00001d013990_P001	Maize	mitochondrion, plastid	42.95	74.41
HORVU1Hr1G042520.2	Barley	mitochondrion	75.0	73.33
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	29.32	47.08
EES07814	Sorghum	mitochondrion, plastid	35.91	37.71
VIT_01s0010g01460.t01	Wine grape	mitochondrion	30.23	34.46
EES01589	Sorghum	mitochondrion	22.5	25.26
EES05467	Sorghum	mitochondrion	26.36	24.79
EES01580	Sorghum	mitochondrion	22.73	22.78
EES01579	Sorghum	mitochondrion	21.36	21.91
EES15434	Sorghum	plastid	22.27	21.08
EER95222	Sorghum	mitochondrion	20.91	18.66

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8067397	UniProt:C5WYB3	EnsemblPlants:EER91465	ProteinID:EER91465
ProteinID:EER91465.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF12854	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF559	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3001G214900	unigene:Sbi.18000
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A8250F	RefSeq:XP_002464467.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:19807387..19809071

Molecular Weight (calculated)

47252.0 Da

IEP (calculated)

9.841

GRAVY (calculated)

-0.094

Length

440 amino acids

Sequence
(BLAST)

001: MASLLLRRRH AAHPRAAAAA CAPLLRAFSA LPDVDPSASS TATPTSTPAA PTSTSARAPV LDLQLAVRAE SDPARIHSLV ASALSGDDFP RIHTSRQLFS
101: LATSRLTRLR RPDLAASLLD LLLASTPPSP GLLARALSLY PGPDDALRAF SSSPPAARSD VSLSALLSAF LRAGRLDEIK STITLAESSH GVAPGRASHN
201: VLLHALVKNS ELAAARKLLD EMANKKLKHR PAPDIISYNT VLAGCSVQDD EEGFEKLLKE ISLSNLEPNV VTYNCRIQWF SKKGETVKGE ELLDVMESKG
301: VAPNYLTYNA LVQGYCKEGN VGAATRVFKR MKVMKRREGR SDLGVSAHSQ VYVVLFRSLV EKEKLDDALW ICKSCFAMKA APPFEAVKGL VEGLVKAGRS
401: TEAKDVVAKM EFLVKGDAKL AWGKVVAELS FKEGPPNSNP

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.