CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05647
EES07083
KXG26554

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	EES05647	AT3G27960.1	21798944
AT1G55890.1	EES07083	AT4G24690.1	21798944
AT1G55890.1	KXG26554	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01580	Sorghum	mitochondrion	72.41	81.32
Zm00001d012606_P001	Maize	mitochondrion	72.41	78.81
HORVU3Hr1G077400.1	Barley	cytosol	48.07	61.88
EES01579	Sorghum	mitochondrion	53.35	61.31
Os01t0785700-01	Rice	mitochondrion	49.29	55.99
TraesCS3B01G353300.1	Wheat	plastid	47.46	55.98
TraesCS3A01G324200.1	Wheat	plastid	51.52	55.82
TraesCS3A01G324300.1	Wheat	plastid	48.48	55.32
TraesCS3D01G317700.1	Wheat	plastid	52.33	54.66
TraesCS3A01G331700.1	Wheat	plastid	47.06	54.33
TraesCS3B01G361800.1	Wheat	plastid	47.87	53.76
TraesCS3A01G324500.1	Wheat	plastid	51.12	53.28
TraesCS3D01G325200.1	Wheat	plastid	47.87	52.56
HORVU3Hr1G077440.2	Barley	mitochondrion	51.52	51.73
TraesCS3A01G331600.1	Wheat	plastid	47.87	51.42
HORVU6Hr1G019320.1	Barley	plastid	47.46	50.43
TraesCS3D01G317800.1	Wheat	plastid	51.32	50.3
TraesCS3B01G353500.1	Wheat	plastid	50.91	49.9
GSMUA_Achr10P...	Banana	mitochondrion	33.87	41.65
VIT_00s0271g00040.t01	Wine grape	cytosol	16.84	40.69
VIT_00s0274g00040.t01	Wine grape	mitochondrion	29.82	38.48
VIT_00s0271g00080.t01	Wine grape	mitochondrion	27.99	38.02
VIT_00s0271g00070.t01	Wine grape	mitochondrion	28.19	36.68
PGSC0003DMT400012953	Potato	cytosol	27.38	35.62
Solyc03g031460.1.1	Tomato	plastid	26.98	35.09
VIT_00s0271g00050.t01	Wine grape	mitochondrion	15.82	34.36
KRH41973	Soybean	nucleus	26.37	34.12
PGSC0003DMT400071165	Potato	extracellular	11.56	32.39
KRH49916	Soybean	cytosol	25.56	31.5
Bra039373.1-P	Field mustard	cytosol	17.44	31.39
Bra037096.1-P	Field mustard	mitochondrion	25.15	31.23
CDY08267	Canola	mitochondrion	25.15	31.23
CDY66550	Canola	mitochondrion	18.86	31.1
CDY26081	Canola	mitochondrion	24.95	31.06
AT3G13160.1	Thale cress	mitochondrion	24.54	30.71
AT1G55890.1	Thale cress	mitochondrion	24.75	30.65
CDX82550	Canola	mitochondrion	24.14	30.28
PGSC0003DMT400055889	Potato	plastid	23.73	29.77
CDY24208	Canola	mitochondrion	23.73	29.7
Bra001492.1-P	Field mustard	mitochondrion	23.94	29.5
CDY43367	Canola	mitochondrion	23.53	29.44
PGSC0003DMT400055888	Potato	mitochondrion	22.31	29.18
Solyc02g079830.1.1	Tomato	mitochondrion	23.53	29.0
Solyc02g079820.2.1	Tomato	cytosol, plastid	16.84	26.52
CDY24210	Canola	plastid	23.53	26.48
CDY43368	Canola	plastid	23.33	26.2
Bra039372.1-P	Field mustard	cytosol, plastid	23.33	24.06
EES07814	Sorghum	mitochondrion, plastid	20.08	23.63
EES01589	Sorghum	mitochondrion	18.46	23.21
EES15434	Sorghum	plastid	20.28	21.51
EER91465	Sorghum	mitochondrion	18.66	20.91
EES05467	Sorghum	mitochondrion	19.47	20.51
AT3G13150.1	Thale cress	plastid	22.92	20.51

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:C5WRR7	EnsemblPlants:EER95222	ProteinID:EER95222	ProteinID:EER95222.2
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3001G448500
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00081ADCCF	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:72580491..72585847

Molecular Weight (calculated)

55271.3 Da

IEP (calculated)

8.966

GRAVY (calculated)

-0.413

Length

493 amino acids

Sequence
(BLAST)

001: MASPARRLSS IFSSTKPRAR LPKPAPEPTQ PAKAPVAQHE QSLLLPKILY PRVTKSKSPP RNHPHLPRST LDLFSSIPKL RRSCCFLPPA EAGGRRSDGG
101: MEAIFRERNP DKLVSRFIAK STASESFRNE HRVYEVAVAR LASFGRHDAI AAIIDSQKPF IKASSVGFAA RLIRLCGRAS MPSHAAAIFH DLPPKHKSIM
201: TFNALLATYV DASDFDALAI AFQQILASHP TIVPTVYSYS ILISALCQKR ELSAALDVIT LMEKRGVSPD NIFFNIVLNG FYRNDSFDDA EKVWEIMKER
301: NIEPDAKCYN AKLRGLISQG RVEDAVALIE RMQKEGPKPD SVSYNELIRG YCKEGRLNQA KKVYDDLIKN ECAPNRGTFH TLVPHFVEAR ELDCALSCCH
401: EIFRRKCRVQ CSLLQGVVTA LIAASRMEEA RRIVQLGRTS YYPRKGLRIP HKGLKMPQPT REDNDVEAET DSEDSVSYED GYDEEEEESK NAQ

Best Arabidopsis Sequence Match ( AT3G13160.1 )
(BLAST)

001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13160, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.