Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43367 | Canola | mitochondrion | 98.91 | 68.78 |
| Bra001492.1-P | Field mustard | mitochondrion | 90.15 | 61.75 |
| AT3G13160.1 | Thale cress | mitochondrion | 79.56 | 55.33 |
| Bra037096.1-P | Field mustard | mitochondrion | 65.69 | 45.34 |
| Solyc03g031460.1.1 | Tomato | plastid | 51.46 | 37.2 |
| PGSC0003DMT400012953 | Potato | cytosol | 51.09 | 36.94 |
| VIT_00s0274g00040.t01 | Wine grape | mitochondrion | 50.73 | 36.39 |
| VIT_00s0271g00080.t01 | Wine grape | mitochondrion | 48.18 | 36.36 |
| KRH41973 | Soybean | nucleus | 45.62 | 32.81 |
| KRH49916 | Soybean | cytosol | 45.99 | 31.5 |
| Bra019842.1-P | Field mustard | cytosol | 25.18 | 24.73 |
| HORVU3Hr1G077400.1 | Barley | cytosol | 34.31 | 24.54 |
| GSMUA_Achr10P... | Banana | mitochondrion | 34.67 | 23.69 |
| Bra039372.1-P | Field mustard | cytosol, plastid | 40.15 | 23.01 |
| EES01580 | Sorghum | mitochondrion | 36.13 | 22.55 |
| EES01579 | Sorghum | mitochondrion | 33.21 | 21.21 |
| TraesCS3A01G331700.1 | Wheat | plastid | 32.85 | 21.08 |
| Zm00001d012606_P001 | Maize | mitochondrion | 34.31 | 20.75 |
| TraesCS3B01G361800.1 | Wheat | plastid | 33.21 | 20.73 |
| TraesCS3A01G324300.1 | Wheat | plastid | 32.48 | 20.6 |
| Os01t0785700-01 | Rice | mitochondrion | 32.48 | 20.51 |
| Bra010568.1-P | Field mustard | mitochondrion | 29.56 | 19.9 |
| TraesCS3A01G324500.1 | Wheat | plastid | 34.31 | 19.87 |
| TraesCS3B01G353300.1 | Wheat | plastid | 30.29 | 19.86 |
| Bra028380.1-P | Field mustard | mitochondrion | 29.56 | 19.85 |
| TraesCS3A01G331600.1 | Wheat | plastid | 33.21 | 19.83 |
| TraesCS3D01G325200.1 | Wheat | plastid | 32.48 | 19.82 |
| TraesCS3A01G324200.1 | Wheat | plastid | 32.48 | 19.56 |
| TraesCS3D01G317700.1 | Wheat | plastid | 33.58 | 19.49 |
| Bra008492.1-P | Field mustard | mitochondrion | 27.37 | 19.13 |
| HORVU3Hr1G077440.2 | Barley | mitochondrion | 33.94 | 18.94 |
| HORVU6Hr1G019320.1 | Barley | plastid | 31.75 | 18.75 |
| Bra003553.1-P | Field mustard | mitochondrion | 26.28 | 18.41 |
| TraesCS3B01G353500.1 | Wheat | plastid | 33.58 | 18.29 |
| TraesCS3D01G317800.1 | Wheat | plastid | 33.58 | 18.29 |
| Bra037216.1-P | Field mustard | mitochondrion | 27.74 | 18.14 |
| EER95222 | Sorghum | mitochondrion | 31.39 | 17.44 |
Protein Annotations
| EnsemblPlants:Bra039373.1 | EnsemblPlants:Bra039373.1-P | EnsemblPlantsGene:Bra039373 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF1622 | PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | TIGRFAMs:TIGR00756 | UniParc:UPI000253E932 |
| UniProt:M4FE52 | MapMan:35.1 | : | : | : | : |
Description
AT3G13160 (E=7e-126) | pentatricopeptide (PPR) repeat-containing protein
Coordinates
chrScaffold000164:-:174440..175264
Molecular Weight (calculated)
30912.4 Da
IEP (calculated)
5.036
GRAVY (calculated)
-0.243
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MFENAQKVFD GMPERNCKRS VLSFNALLNA CVNSKKFDLV ESIFKELPGK LSIQPDIASY NTLIKGLCGK GSLSEAIALI DEIENKGLKP DHFTYNLLLH
101: ETYTKGHFEL GEEIWGRMVE KDLARDIRSY NARLLGLALE MKSEEMVNLF DELKGNGIKP DVFTFTAMVR GCACAGKVDE AKTWYKELEK NGFRPMKLLF
201: SSLLPAMCKA GDLESAFELC KEIFTKRLLV DGDIMQDVVD ELVKGSKQGE AEEIVELAKK NDYLQFKLHL SSEE
101: ETYTKGHFEL GEEIWGRMVE KDLARDIRSY NARLLGLALE MKSEEMVNLF DELKGNGIKP DVFTFTAMVR GCACAGKVDE AKTWYKELEK NGFRPMKLLF
201: SSLLPAMCKA GDLESAFELC KEIFTKRLLV DGDIMQDVVD ELVKGSKQGE AEEIVELAKK NDYLQFKLHL SSEE
001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE
Arabidopsis Description
Pentatricopeptide repeat-containing protein At3g13160, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK57]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.