Factsheet for Bra003553.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57688	Canola	mitochondrion	98.21	98.21
Bra008492.1-P	Field mustard	mitochondrion	86.19	85.97
AT1G80150.1	Thale cress	mitochondrion	78.26	77.08
VIT_09s0002g06540.t01	Wine grape	mitochondrion	62.92	58.29
PGSC0003DMT400072924	Potato	mitochondrion	57.03	55.06
Zm00001d006609_P001	Maize	cytosol	41.43	51.92
Zm00001d014711_P001	Maize	cytosol	32.74	45.07
Os08t0499800-01	Rice	mitochondrion	50.13	44.24
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	50.13	43.75
TraesCS7D01G240000.1	Wheat	endoplasmic reticulum, plastid	49.62	43.6
TraesCS7B01G136500.1	Wheat	endoplasmic reticulum, plastid	49.36	43.37
Zm00001d031321_P001	Maize	mitochondrion	50.64	43.14
Solyc05g012250.1.1	Tomato	mitochondrion	56.78	43.11
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	49.1	42.76
EES15434	Sorghum	plastid	50.38	42.37
HORVU3Hr1G070290.2	Barley	mitochondrion	40.15	39.65
Bra019842.1-P	Field mustard	cytosol	20.97	29.39
Bra037216.1-P	Field mustard	mitochondrion	29.67	27.68
Bra010568.1-P	Field mustard	mitochondrion	28.39	27.27
Bra028380.1-P	Field mustard	mitochondrion	28.13	26.96
Bra001492.1-P	Field mustard	mitochondrion	27.11	26.5
Bra037096.1-P	Field mustard	mitochondrion	26.85	26.45
Bra039373.1-P	Field mustard	cytosol	18.41	26.28
Bra039372.1-P	Field mustard	cytosol, plastid	27.62	22.59

Protein Annotations

EnsemblPlants:Bra003553.1	EnsemblPlants:Bra003553.1-P	EnsemblPlantsGene:Bra003553	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1623	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI00025419D8	UniProt:M4CH70	MapMan:35.1	:	:	:

Description

AT1G80150 (E=1e-160) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA07:+:13753817..13754992

Molecular Weight (calculated)

44477.1 Da

IEP (calculated)

10.237

GRAVY (calculated)

-0.050

Length

391 amino acids

Sequence
(BLAST)

001: MLSLPLTRRF FFRSCSSIAT AVATIPAESN QKELTPALVK LKSERDPEKL FNLFKSNATN SLVIENRFAF QDTISRLAGA RRFDYIEALL EHQKALPQGR
101: REGFVVRIIM LYGKAGMTKH ALDTFYNMDS SKRTVKSFNA ALKVLTLKPD LHTIQDFIGH VPFKYGVVMD VVSFNIAIKS LCEMGFLDKA SLAMKEMEKF
201: GLKPDVVTYT TLISAFYKQD RYVIGNGLWN RMVIKGCRPN LTTFNVRIQF LVNRGRAWDA NDLLMLMPKL QMEPDSVTYN MVIKGFFLAG FPEMAERVYT
301: AMHGKGCKPN VKIYQTMIHY LCKAGKFDLG YTMCKDCMRK KWYPNLDTVG VLLDGLVKKG QLDQAKLIMG LVRKRVPPFS SKQLLSLESV L

Best Arabidopsis Sequence Match ( AT1G80150.1 )
(BLAST)

001: MLSLRHIRRF CHFPSSAATG IAYVSTESNQ IQGLKPLEEP ALVKLKSERD PEKLYNLFKA NATNRLVIEN RFAFEDTVSR LAGAGRLDFI EDLLEHQKTL
101: PQGRREGFIV RIIMLYGKAG MTKQALDTFF NMDLYGCKRS VKSFNAALQV LSFNPDLHTI WEFLHDAPSK YGIDIDAVSF NIAIKSFCEL GILDGAYMAM
201: REMEKSGLTP DVVTYTTLIS ALYKHERCVI GNGLWNLMVL KGCKPNLTTF NVRIQFLVNR RRAWDANDLL LLMPKLQVEP DSITYNMVIK GFFLARFPDM
301: AERVYTAMHG KGYKPNLKIY QTMIHYLCKA GNFDLAYTMC KDCMRKKWYP NLDTVEMLLK GLVKKGQLDQ AKSIMELVHR RVPPFRSKQL LSLKSIL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g80150, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GW57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.