Factsheet for PGSC0003DMT400072924

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012250.1.1	Tomato	mitochondrion	95.8	75.34
CDY38649	Canola	mitochondrion	55.31	57.73
VIT_09s0002g06540.t01	Wine grape	mitochondrion	60.0	57.58
AT1G80150.1	Thale cress	mitochondrion	56.3	57.43
Bra003553.1-P	Field mustard	mitochondrion	55.06	57.03
CDY57688	Canola	mitochondrion	55.06	57.03
Bra008492.1-P	Field mustard	mitochondrion	54.81	56.63
CDY54310	Canola	mitochondrion	53.83	55.75
CDY37572	Canola	mitochondrion	54.57	55.53
Zm00001d006609_P001	Maize	cytosol	38.77	50.32
Zm00001d014711_P001	Maize	cytosol	31.85	45.42
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	47.41	42.86
Os08t0499800-01	Rice	mitochondrion	46.42	42.44
TraesCS7D01G240000.1	Wheat	endoplasmic reticulum, plastid	46.42	42.25
TraesCS7B01G136500.1	Wheat	endoplasmic reticulum, plastid	46.42	42.25
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	46.67	42.09
Zm00001d031321_P001	Maize	mitochondrion	47.65	42.05
EES15434	Sorghum	plastid	46.91	40.86
HORVU3Hr1G070290.2	Barley	mitochondrion	39.26	40.15
PGSC0003DMT400090439	Potato	plastid	29.38	29.31
PGSC0003DMT400012953	Potato	cytosol	27.16	29.02
PGSC0003DMT400055888	Potato	mitochondrion	26.42	28.38
PGSC0003DMT400039992	Potato	cytosol	27.9	27.49
PGSC0003DMT400055889	Potato	plastid	25.68	26.46
PGSC0003DMT400029367	Potato	mitochondrion	25.68	25.87
PGSC0003DMT400071165	Potato	extracellular	10.12	23.3

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102595216	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1CR74	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
EnsemblPlantsGene:PGSC0003DMG402028370	PGSC:PGSC0003DMG402028370	EnsemblPlants:PGSC0003DMT400072924	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1623
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296B2A5	RefSeq:XP_006348685.1	RefSeq:XP_015164804.1

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402028370]

Coordinates

chr5:+:541514..548244

Molecular Weight (calculated)

46652.5 Da

IEP (calculated)

10.207

GRAVY (calculated)

-0.093

Length

405 amino acids

Sequence
(BLAST)

001: MLTLRLVRRF GTRSRLAAVS GAGNTSKKTL VSKRKSVKVD EPALFRLKKE KNPEKLFQLF KENAHNKIVI ENRYAFEDTV SRLAGAGRFD YIENLLEHQK
101: TLPQGRREGF IIRIIMLYGK AGMIQNAMKT FYEMHLYGCP RTVKSFNAAL KVLTQSHDME AIESFLWDVP ERFSINIDIL SVNTVISSFC SMGILEKAYL
201: FMVEMEKLGI SPDVFTYTIL ISAFYKVNRW QIADGLWNLM VRKGCMPNVA TFNVRIQFMV NMRFAWEANK LLQLMKRIGI TPDEVTYNLV IKGFFLVENL
301: QMAKRIYSAF HGAGFKPNSR IYQTMIHYLC RAGDFDLAYS MCKESMKNNW FPSSDIIKNI LEGLCKDGTE EKMGNARFLV ILAKKKIPPF STETLNVMRS
401: IIDRS

Best Arabidopsis Sequence Match ( AT1G80150.1 )
(BLAST)

001: MLSLRHIRRF CHFPSSAATG IAYVSTESNQ IQGLKPLEEP ALVKLKSERD PEKLYNLFKA NATNRLVIEN RFAFEDTVSR LAGAGRLDFI EDLLEHQKTL
101: PQGRREGFIV RIIMLYGKAG MTKQALDTFF NMDLYGCKRS VKSFNAALQV LSFNPDLHTI WEFLHDAPSK YGIDIDAVSF NIAIKSFCEL GILDGAYMAM
201: REMEKSGLTP DVVTYTTLIS ALYKHERCVI GNGLWNLMVL KGCKPNLTTF NVRIQFLVNR RRAWDANDLL LLMPKLQVEP DSITYNMVIK GFFLARFPDM
301: AERVYTAMHG KGYKPNLKIY QTMIHYLCKA GNFDLAYTMC KDCMRKKWYP NLDTVEMLLK GLVKKGQLDQ AKSIMELVHR RVPPFRSKQL LSLKSIL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g80150, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GW57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.