Factsheet for PGSC0003DMT400029367

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005280.1.1	Tomato	mitochondrion	97.51	97.51
VIT_10s0116g00030.t01	Wine grape	plastid	66.17	67.17
VIT_10s0116g00090.t01	Wine grape	mitochondrion	40.3	63.53
KRH11411	Soybean	nucleus	58.21	60.31
AT1G61870.1	Thale cress	mitochondrion	59.2	58.33
CDY25328	Canola	mitochondrion, plastid	58.71	57.84
CDY07260	Canola	cytosol	21.89	57.52
CDY47165	Canola	mitochondrion	58.21	57.35
Bra028380.1-P	Field mustard	mitochondrion	57.96	57.11
KRH20872	Soybean	mitochondrion	24.63	56.25
GSMUA_Achr6P00410_001	Banana	mitochondrion	47.26	53.98
GSMUA_Achr11P...	Banana	cytosol	25.12	51.79
Bra019842.1-P	Field mustard	cytosol	35.07	50.54
CDX97972	Canola	cytosol	34.83	50.18
AT1G11630.1	Thale cress	mitochondrion	49.75	49.38
Os01t0793200-01	Rice	mitochondrion	47.01	48.46
EES01589	Sorghum	mitochondrion	46.52	47.7
CDY49792	Canola	plastid	48.01	47.3
Zm00001d043225_P001	Maize	mitochondrion	46.02	47.07
KRH20873	Soybean	cytosol, mitochondrion	14.43	45.67
TraesCS3B01G355800.1	Wheat	mitochondrion	44.03	45.38
TraesCS3A01G326500.1	Wheat	mitochondrion	43.78	45.13
HORVU3Hr1G077780.1	Barley	mitochondrion	43.53	44.87
TraesCS3D01G319900.1	Wheat	mitochondrion	37.56	44.67
HORVU5Hr1G041750.1	Barley	cytosol	27.36	30.99
PGSC0003DMT400012953	Potato	cytosol	26.37	27.97
PGSC0003DMT400090439	Potato	plastid	28.11	27.83
PGSC0003DMT400039992	Potato	cytosol	27.36	26.76
PGSC0003DMT400055888	Potato	mitochondrion	24.13	25.73
PGSC0003DMT400072924	Potato	mitochondrion	25.87	25.68
PGSC0003DMT400055889	Potato	plastid	23.88	24.43
PGSC0003DMT400071165	Potato	extracellular	10.2	23.3

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102597106	MapMan:17.7.1.3.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:M1ASP1	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	EnsemblPlantsGene:PGSC0003DMG400011285	PGSC:PGSC0003DMG400011285	EnsemblPlants:PGSC0003DMT400029367	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF579	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000295E4E8
RefSeq:XP_006352610.1	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011285]

Coordinates

chr10:+:338617..340501

Molecular Weight (calculated)

45416.0 Da

IEP (calculated)

9.211

GRAVY (calculated)

-0.323

Length

402 amino acids

Sequence
(BLAST)

001: MAALRSKLRF ITSQHHHHLR HYSAASILNP DSKSPLSGKD KSRAALTLLK SETNPQRILD ICRAAALTPE SHLDRIAYSK AISKLKDLNH FSGIRSFLQE
101: STTRPDLKSE RFISHFIVLY GQAGLLDEAK RTFEEMEKMG IQRTERTLNA LLFACVLAKN YAEMKRVFVE FPKKYGFVPN LDTYNVVIKG FCESGSASSV
201: YSILDEMKRN NVKPNAESFG NCISGFYKEE KYEDVGKMLE MMKGYKMVTG ISTYNVRIQS LCKLKKSGEA KALLDGILSR GLKANCATYG HLILGFCKEG
301: NLEEAKSMFQ KMVNSGLKPD AECYFTLVYY LCQSRDFEAA LEMYKKCLAD GWVPNFSTMK SLVEGLASIS KVDEAREVIA QVKEKISRNV EKWNDIEEAL
401: PK

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.