CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	37.8	24.62
CDY07260	Canola	cytosol	28.35	23.53
KRH11411	Soybean	nucleus	68.5	22.42
Bra019842.1-P	Field mustard	cytosol	37.8	17.2
CDX97972	Canola	cytosol	37.8	17.2
VIT_10s0116g00030.t01	Wine grape	plastid	50.39	16.16
GSMUA_Achr6P00410_001	Banana	mitochondrion	41.73	15.06
Bra028380.1-P	Field mustard	mitochondrion	47.24	14.71
Solyc10g005280.1.1	Tomato	mitochondrion	46.46	14.68
CDY25328	Canola	mitochondrion, plastid	46.46	14.46
CDY47165	Canola	mitochondrion	46.46	14.46
PGSC0003DMT400029367	Potato	mitochondrion	45.67	14.43
AT1G61870.1	Thale cress	mitochondrion	44.88	13.97
TraesCS3D01G319900.1	Wheat	mitochondrion	37.01	13.91
AT1G11630.1	Thale cress	mitochondrion	44.09	13.83
EES01589	Sorghum	mitochondrion	40.16	13.01
TraesCS3B01G355800.1	Wheat	mitochondrion	39.37	12.82
TraesCS3A01G326500.1	Wheat	mitochondrion	39.37	12.82
Os01t0793200-01	Rice	mitochondrion	38.58	12.56
HORVU3Hr1G077780.1	Barley	mitochondrion	37.8	12.31
CDY49792	Canola	plastid	38.58	12.01
Zm00001d043225_P001	Maize	mitochondrion	37.01	11.96
KRH41973	Soybean	nucleus	23.62	7.87
KRH49916	Soybean	cytosol	23.62	7.5
HORVU5Hr1G041750.1	Barley	cytosol	14.17	5.07
VIT_10s0116g00090.t01	Wine grape	mitochondrion	4.72	2.35
KRH20872	Soybean	mitochondrion	0.0	0.0

Protein Annotations

EMBL:ACUP02008323	EnsemblPlants:KRH20873	EnsemblPlantsGene:GLYMA_13G206100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF579	PFAM:PF01535	PFscan:PS51375	ProteinID:KRH20873	ProteinID:KRH20873.1	TIGRFAMs:TIGR00756
UniParc:UPI0006EDE349	UniProt:A0A0R0GZU5	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:32003359..32005116

Molecular Weight (calculated)

14639.0 Da

IEP (calculated)

9.302

GRAVY (calculated)

-0.208

Length

127 amino acids

Sequence
(BLAST)

001: MGFVKRGTLR LFKYMKRRGY LPEGECYFTL VHFLCRGGEF EAALDVAKEC IRKGWVPNFT TMKSLVNGLA GASKVDVAKE VIKQIKEKFA ENGDKWIRLK
101: LGWISEKECG LLCIVQFFDQ FERSTEN

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.