CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH03220
KRH56614
KRH57136

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	KRG93305	AT3G27960.1	21798944
AT1G55890.1	KRH56614	AT3G27960.1	21798944
AT1G55890.1	KRH03220	AT4G24690.1	21798944
AT1G55890.1	KRH57136	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41973	Soybean	nucleus	88.75	93.18
VIT_00s0271g00080.t01	Wine grape	mitochondrion	48.0	52.89
PGSC0003DMT400012953	Potato	cytosol	50.0	52.77
Solyc03g031460.1.1	Tomato	plastid	49.5	52.24
VIT_00s0274g00040.t01	Wine grape	mitochondrion	49.75	52.09
AT1G55890.1	Thale cress	mitochondrion	47.75	47.99
CDY26081	Canola	mitochondrion	47.25	47.73
Bra037096.1-P	Field mustard	mitochondrion	47.25	47.61
CDY08267	Canola	mitochondrion	47.25	47.61
AT3G13160.1	Thale cress	mitochondrion	46.0	46.7
Bra039373.1-P	Field mustard	cytosol	31.5	45.99
CDY66550	Canola	mitochondrion	33.5	44.82
CDY43367	Canola	mitochondrion	43.25	43.91
CDY24208	Canola	mitochondrion	42.75	43.4
Bra001492.1-P	Field mustard	mitochondrion	43.25	43.25
CDX82550	Canola	mitochondrion	42.0	42.75
GSMUA_Achr10P...	Banana	mitochondrion	36.75	36.66
HORVU3Hr1G077400.1	Barley	cytosol	30.5	31.85
Zm00001d012606_P001	Maize	mitochondrion	34.75	30.68
TraesCS3B01G361800.1	Wheat	plastid	33.25	30.3
Os01t0785700-01	Rice	mitochondrion	32.75	30.18
EES01580	Sorghum	mitochondrion	33.0	30.07
KRH11411	Soybean	nucleus	28.75	29.64
TraesCS3B01G353300.1	Wheat	plastid	30.75	29.43
EES01579	Sorghum	mitochondrion	31.5	29.37
TraesCS3A01G324200.1	Wheat	plastid	33.25	29.23
KRH20872	Soybean	mitochondrion	12.75	28.98
TraesCS3A01G324300.1	Wheat	plastid	31.25	28.94
TraesCS3D01G325200.1	Wheat	plastid	32.25	28.73
TraesCS3A01G331600.1	Wheat	plastid	32.75	28.54
TraesCS3D01G317700.1	Wheat	plastid	33.0	27.97
TraesCS3A01G331700.1	Wheat	plastid	29.0	27.17
TraesCS3A01G324500.1	Wheat	plastid	31.25	26.43
HORVU6Hr1G019320.1	Barley	plastid	30.5	26.29
EER95222	Sorghum	mitochondrion	31.5	25.56
HORVU3Hr1G077440.2	Barley	mitochondrion	31.0	25.25
TraesCS3B01G353500.1	Wheat	plastid	30.5	24.25
TraesCS3D01G317800.1	Wheat	plastid	30.25	24.06
KRH20873	Soybean	cytosol, mitochondrion	7.5	23.62

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100804582	MapMan:35.1	EMBL:ACUP02004647	EnsemblPlantsGene:GLYMA_07G187800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1KLB3	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH49916	ProteinID:KRH49916	ProteinID:KRH49916.1
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00023C6E80	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:35539758..35541866

Molecular Weight (calculated)

45523.7 Da

IEP (calculated)

8.512

GRAVY (calculated)

-0.369

Length

400 amino acids

Sequence
(BLAST)

001: MAPFRPCVVF NTVAEDTRSH KMYHVLNRAF CTATEPATTI AASIRSISED LYKEVKLKNV VEKFKKASDN DRFRKKTGIY EDTVRRLAGA RRFRWVRDIL
101: EHQKQYSDIS NEGFSARLIS LYGKSGMTKH ARKVFDEMPQ RNCSRTVLSL NALLAAYLHS HKYDVVQELF RDLPTQLSIK PDLVTYNTII KAFCEKGSFD
201: SALSVLREIE EKGLSPDSIT FNTLLDGLYS KGRFEEGEKV WEQMSVNNVA PGVRSYCSKL VGLAEVKKAG EAVELFREME KVGVKPDLFC INAVIKGFVN
301: EGNLDEAKKW FGEIAKSEYD PDKNTYSIIV PFLCEKGDFK TAIEMCKEIF NNRCRVDATL LQGVVDKLAS EGMITEAKEI VEIGKTNRYC RYRLDLPAKE

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.