Factsheet for TraesCS3B01G353500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G327000.1
TraesCS2B01G355000.6
TraesCS2D01G335900.1
TraesCS6A01G208300.2
TraesCS6A01G274500.1
TraesCS6B01G236800.1
TraesCS6B01G302000.1
TraesCS6D01G191900.3
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS2A01G327000.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS2B01G355000.6	AT4G24690.1	21798944
AT1G55890.1	TraesCS2D01G335900.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6A01G208300.2	AT4G24690.1	21798944
AT1G55890.1	TraesCS6B01G236800.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6D01G191900.3	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G324500.1	Wheat	plastid	87.28	92.81
TraesCS3D01G317800.1	Wheat	plastid	92.64	92.64
HORVU3Hr1G077440.2	Barley	mitochondrion	87.28	89.41
TraesCS3B01G353300.1	Wheat	plastid	68.19	82.06
TraesCS3B01G361800.1	Wheat	plastid	62.03	71.07
Os01t0785700-01	Rice	mitochondrion	53.68	62.21
EES01580	Sorghum	mitochondrion	48.71	55.81
Zm00001d012606_P001	Maize	mitochondrion	50.1	55.63
EES01579	Sorghum	mitochondrion	46.92	55.01
EER95222	Sorghum	mitochondrion	49.9	50.91
GSMUA_Achr10P...	Banana	mitochondrion	38.57	48.38
VIT_00s0271g00040.t01	Wine grape	cytosol	15.11	37.25
VIT_00s0271g00050.t01	Wine grape	mitochondrion	16.5	36.56
VIT_00s0274g00040.t01	Wine grape	mitochondrion	27.44	36.13
VIT_00s0271g00080.t01	Wine grape	mitochondrion	25.84	35.81
VIT_00s0271g00070.t01	Wine grape	mitochondrion	26.84	35.62
PGSC0003DMT400012953	Potato	cytosol	25.45	33.77
Bra039373.1-P	Field mustard	cytosol	18.29	33.58
Solyc03g031460.1.1	Tomato	plastid	25.05	33.25
PGSC0003DMT400071165	Potato	extracellular	11.53	32.95
Bra037096.1-P	Field mustard	mitochondrion	25.65	32.49
CDY08267	Canola	mitochondrion	25.65	32.49
CDY26081	Canola	mitochondrion	25.45	32.32
KRH41973	Soybean	nucleus	24.45	32.28
AT1G55890.1	Thale cress	mitochondrion	25.45	32.16
CDY24208	Canola	mitochondrion	24.65	31.47
AT3G13160.1	Thale cress	mitochondrion	24.65	31.47
CDX82550	Canola	mitochondrion	24.45	31.3
CDY43367	Canola	mitochondrion	24.45	31.22
CDY66550	Canola	mitochondrion	18.49	31.1
PGSC0003DMT400055888	Potato	mitochondrion	23.26	31.03
Solyc02g079830.1.1	Tomato	mitochondrion	24.65	31.0
KRH49916	Soybean	cytosol	24.25	30.5
Bra001492.1-P	Field mustard	mitochondrion	24.25	30.5
PGSC0003DMT400055889	Potato	plastid	23.46	30.03
Solyc02g079820.2.1	Tomato	cytosol, plastid	16.5	26.52
TraesCS3B01G355800.1	Wheat	mitochondrion	20.28	26.15
TraesCS6B01G260000.1	Wheat	mitochondrion	23.46	25.54
TraesCS6B01G473500.1	Wheat	mitochondrion	20.87	24.82
CDY24210	Canola	plastid	21.27	24.43
CDY43368	Canola	plastid	21.27	24.37
TraesCS1B01G176200.1	Wheat	mitochondrion	19.48	23.0
TraesCS7B01G136500.1	Wheat	endoplasmic reticulum, plastid	19.88	22.47
Bra039372.1-P	Field mustard	cytosol, plastid	21.07	22.18
AT3G13150.1	Thale cress	plastid	21.87	19.96

Protein Annotations

EnsemblPlants:TraesCS3B01G353500.1	EnsemblPlantsGene:TraesCS3B01G353500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR006311	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TAT_signal	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622	PFAM:PF01535	PFAM:PF13041	PFscan:PS51318	PFscan:PS51375
SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3B:+:564038091..564039602

Molecular Weight (calculated)

54952.7 Da

IEP (calculated)

8.248

GRAVY (calculated)

-0.388

Length

503 amino acids

Sequence
(BLAST)

001: MSRQNPPSPI HSPLLSPQTP STRRIPMATT AAAAAAAAAT ASTRANSLSR IFSSSSPIVQ PPKRNPKTKS APKPKPTPKP PAADAVSIAD EKPPKPLGAQ
101: PAAKGDSDGK HKLPKPLGLL VKALSRQRDP DKLISGFIQA STVSSRFRDR HRVFEIAVSR LTSLGRQDGI EAIIEAQMPF LETSAEGFAS RLIRLYGRAS
201: MPSHAAATFH KLPAQHKSNM TFNSLLSCYA DAGDFDGLTA AFQEIPATYP SIVPTVYSYN VLIHALCRKP DVSAALDAVH LMEKIGVSPD IITFNTLLNG
301: FCNNGRLDEA ETVWEMIKER NLEPDAKCYN AKLRGLVAEG RIDDAAAVLE GLEKDGPKPD TVSYNELIRG YCKAGKLQEA KKLYDDLVKN ECAPNKGTYE
401: TLLPHLLQAG ELDCALTYCY KIFSHKRNLR VECGVLQDVV NALVDVLRVE EAAKIIVLGR KKYYPRKGLR MPDSTKGSEL RAETDEEEAI SEEECEVEHE
501: TEK

Best Arabidopsis Sequence Match ( AT3G13160.1 )
(BLAST)

001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13160, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.