CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43367	Canola	mitochondrion	97.21	97.21
CDY66550	Canola	mitochondrion	65.99	86.96
CDX82550	Canola	mitochondrion	86.29	86.51
AT3G13160.1	Thale cress	mitochondrion	79.95	79.95
CDY26081	Canola	mitochondrion	64.97	64.65
CDY08267	Canola	mitochondrion	64.47	63.98
VIT_00s0271g00080.t01	Wine grape	mitochondrion	46.45	50.41
VIT_00s0274g00040.t01	Wine grape	mitochondrion	48.22	49.74
Solyc03g031460.1.1	Tomato	plastid	47.21	49.08
PGSC0003DMT400012953	Potato	cytosol	47.21	49.08
KRH41973	Soybean	nucleus	43.15	44.62
KRH49916	Soybean	cytosol	43.4	42.75
CDY43368	Canola	plastid	38.32	34.4
CDY24210	Canola	plastid	38.07	34.25
GSMUA_Achr10P...	Banana	mitochondrion	32.99	32.42
HORVU3Hr1G077400.1	Barley	cytosol	31.22	32.11
EES01579	Sorghum	mitochondrion	31.73	29.14
Os01t0785700-01	Rice	mitochondrion	31.73	28.8
TraesCS3B01G361800.1	Wheat	plastid	31.98	28.7
EES01580	Sorghum	mitochondrion	31.98	28.7
CDY37572	Canola	mitochondrion	28.93	28.64
TraesCS3A01G324300.1	Wheat	plastid	31.22	28.47
Zm00001d012606_P001	Maize	mitochondrion	32.49	28.26
CDY38649	Canola	mitochondrion	27.66	28.09
CDY57688	Canola	mitochondrion	27.41	27.62
TraesCS3A01G331700.1	Wheat	plastid	29.7	27.4
CDY54310	Canola	mitochondrion	26.9	27.11
TraesCS3B01G353300.1	Wheat	plastid	28.68	27.03
TraesCS3A01G331600.1	Wheat	plastid	31.47	27.02
TraesCS3A01G324500.1	Wheat	plastid	32.23	26.85
TraesCS3A01G324200.1	Wheat	plastid	30.96	26.81
CDY35471	Canola	mitochondrion	27.66	26.78
TraesCS3D01G325200.1	Wheat	plastid	30.46	26.73
CDY24774	Canola	mitochondrion	27.41	26.54
TraesCS3D01G317700.1	Wheat	plastid	31.22	26.06
HORVU6Hr1G019320.1	Barley	plastid	30.46	25.86
CDY25328	Canola	mitochondrion, plastid	26.65	25.74
HORVU3Hr1G077440.2	Barley	mitochondrion	31.98	25.66
CDY47165	Canola	mitochondrion	26.4	25.49
CDY07260	Canola	cytosol	9.9	25.49
TraesCS3D01G317800.1	Wheat	plastid	31.73	24.85
CDX97972	Canola	cytosol	17.51	24.73
TraesCS3B01G353500.1	Wheat	plastid	31.47	24.65
CDY66741	Canola	mitochondrion	26.14	24.58
CDY67618	Canola	mitochondrion	25.89	24.34
EER95222	Sorghum	mitochondrion	29.7	23.73
CDY49792	Canola	plastid	24.37	23.53

Protein Annotations

EnsemblPlants:CDY24208	EnsemblPlantsGene:GSBRNA2T00026311001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY24208	ProteinID:CDY24208.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EB01C6	UniProt:A0A078GHU9	MapMan:35.1	:	:

Description

BnaC01g37880DBnaC01g37880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHU9]

Coordinates

chrLK032155:+:266347..267830

Molecular Weight (calculated)

44701.9 Da

IEP (calculated)

7.456

GRAVY (calculated)

-0.353

Length

394 amino acids

Sequence
(BLAST)

001: MSSLSRLLLR ATNNFNTPTS GRFFSAATAA AAATSQRTPS LITLVNDEQD PKYITEKFKK ASETEWFRKN IAVYERTVRR LAAAKKFEWI EEILEEQNKY
101: HNMSKEGFVA RIINLYGRAG MFENAQKVFD GMPERNCKRS VLSFNALLNA SVNSKKFDLL ESIFKELPGK LSIQPDIASY NTLIKGLCGK GSLSEAIALI
201: DEIENKGLKP DHFTYNLLLH ETYTKGHFEL GEEIWARMVE KDLARDIRSY NARLLGLALE MKSEEMVNLF DELKGNGIKP DVFTFTAMVR GCAGAGKMDE
301: AKTWYKELEK NGFRPMKLLF STLLPAMCKA GDLESAFELC KEIFTKRLLV DGDIMQEVVD ELVKGSKKDE AEEIVELAKK NDYLQFKLHL SSKE

Best Arabidopsis Sequence Match ( AT3G13160.1 )
(BLAST)

001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13160, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.