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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G327000.1
TraesCS2B01G355000.6
TraesCS2D01G335900.1
TraesCS6A01G208300.2
TraesCS6A01G274500.1
TraesCS6B01G236800.1
TraesCS6B01G302000.1
TraesCS6D01G191900.3
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G55890.1 TraesCS6A01G274500.1 AT3G27960.1 21798944
AT1G55890.1 TraesCS6B01G302000.1 AT3G27960.1 21798944
AT1G55890.1 TraesCS6D01G254800.1 AT3G27960.1 21798944
AT1G55890.1 TraesCS2A01G327000.1 AT4G24690.1 21798944
AT1G55890.1 TraesCS2B01G355000.6 AT4G24690.1 21798944
AT1G55890.1 TraesCS2D01G335900.1 AT4G24690.1 21798944
AT1G55890.1 TraesCS6A01G208300.2 AT4G24690.1 21798944
AT1G55890.1 TraesCS6B01G236800.1 AT4G24690.1 21798944
AT1G55890.1 TraesCS6D01G191900.3 AT4G24690.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3B01G353300.1 Wheat plastid 83.47 94.26
TraesCS3A01G324200.1 Wheat plastid 90.68 94.07
HORVU3Hr1G077400.1 Barley cytosol 71.61 88.25
TraesCS3D01G317800.1 Wheat plastid 79.87 74.95
TraesCS3D01G325200.1 Wheat plastid 70.55 74.16
Os01t0785700-01 Rice mitochondrion 57.84 62.9
Zm00001d012606_P001 Maize mitochondrion 55.08 57.4
EES01580 Sorghum mitochondrion 52.97 56.95
EES01579 Sorghum mitochondrion 50.0 55.01
EER95222 Sorghum mitochondrion 54.66 52.33
GSMUA_Achr10P... Banana mitochondrion 41.74 49.13
VIT_00s0271g00040.t01 Wine grape cytosol 16.95 39.22
VIT_00s0274g00040.t01 Wine grape mitochondrion 30.72 37.96
VIT_00s0271g00070.t01 Wine grape mitochondrion 29.87 37.2
VIT_00s0271g00080.t01 Wine grape mitochondrion 28.6 37.19
VIT_00s0271g00050.t01 Wine grape mitochondrion 17.8 37.0
PGSC0003DMT400012953 Potato cytosol 29.03 36.15
Solyc03g031460.1.1 Tomato plastid 28.6 35.62
KRH41973 Soybean nucleus 27.97 34.65
PGSC0003DMT400055888 Potato mitochondrion 27.33 34.22
CDY26081 Canola mitochondrion 28.39 33.84
CDY08267 Canola mitochondrion 28.39 33.75
Bra037096.1-P Field mustard mitochondrion 28.39 33.75
AT1G55890.1 Thale cress mitochondrion 28.39 33.67
Bra039373.1-P Field mustard cytosol 19.49 33.58
KRH49916 Soybean cytosol 27.97 33.0
PGSC0003DMT400055889 Potato plastid 27.33 32.82
Solyc02g079830.1.1 Tomato mitochondrion 27.75 32.75
PGSC0003DMT400071165 Potato extracellular 12.08 32.39
CDX82550 Canola mitochondrion 26.48 31.81
CDY66550 Canola mitochondrion 20.13 31.77
AT3G13160.1 Thale cress mitochondrion 26.06 31.22
CDY24208 Canola mitochondrion 26.06 31.22
CDY43367 Canola mitochondrion 25.85 30.96
Bra001492.1-P Field mustard mitochondrion 25.85 30.5
Solyc02g079820.2.1 Tomato cytosol, plastid 19.92 30.03
CDY24210 Canola plastid 23.94 25.8
TraesCS6D01G214000.1 Wheat mitochondrion 25.21 25.76
CDY43368 Canola plastid 23.94 25.74
TraesCS6D01G401100.1 Wheat mitochondrion 22.03 24.59
TraesCS3D01G319900.1 Wheat mitochondrion 17.58 24.56
Bra039372.1-P Field mustard cytosol, plastid 23.73 23.43
TraesCS7D01G240000.1 Wheat endoplasmic reticulum, plastid 20.34 21.57
AT3G13150.1 Thale cress plastid 24.79 21.23
Protein Annotations
EnsemblPlants:TraesCS3D01G317700.1EnsemblPlantsGene:TraesCS3D01G317700Gene3D:1.25.40.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002885InterPro:IPR011990InterPro:Pentatricopeptide_repeatInterPro:TPR-like_helical_dom_sfPANTHER:PTHR24015PANTHER:PTHR24015:SF1622
PFAM:PF13041PFscan:PS51375SEG:segSUPFAM:SSF48452TIGRFAMs:TIGR00756MapMan:35.1
Description
No Description!
Coordinates
chr3D:+:431627906..431629324
Molecular Weight (calculated)
51666.4 Da
IEP (calculated)
7.180
GRAVY (calculated)
-0.435
Length
472 amino acids
Sequence
(BLAST)
001: MASAAAAAAT RANSLSRIFS SSSPTAKLPK RNPKTKSAPA PTPTPKPPAA DADSIAGQKL LKPLGAQPAA KAESDADRKL PKPLDDILIA LIRQRNPDKL
101: VSEFVQASTV SSRFRERHRV YEVAVSRLTS FGRQDGIKAI IEAQKPFLET SNEGFATRLI RLYGRASMPS HAAATFHELP TQHKSTMTFN ALLAAYAEAG
201: DLDGLTAAFR EIPATHPSIV PSVYSYNILI RALCQKSDLS AALEAVLLME KHGISPDIIT FNTLLNGFCN NGPTDEAETV WEMMKERNLE PDAKCYNAKL
301: RGLVAEGRTD DAAAVLERLE KDGPKPDTVS YNELIRGYLK AGRLQEAKKL YDDLGKNHCA ANKGTYETLV PHLVQAGDLD CALRYCYEMF SSKRSSRVEC
401: GVLQDVVNAL VDASRVEEAA KLVDIGRKKY YYSRKGLRMP GSAKGSELRA ETDEEEAISE EKECEVEDET EK
Best Arabidopsis Sequence Match ( AT3G13160.1 )
(BLAST)
001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE
Arabidopsis Description
Pentatricopeptide repeat-containing protein At3g13160, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK57]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.