Factsheet for TraesCS3D01G319900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G355800.1	Wheat	mitochondrion	99.11	85.9
TraesCS3A01G326500.1	Wheat	mitochondrion	98.82	85.64
HORVU3Hr1G077780.1	Barley	mitochondrion	95.86	83.08
Os01t0793200-01	Rice	mitochondrion	84.32	73.08
EES01589	Sorghum	mitochondrion	82.54	71.17
Zm00001d043225_P001	Maize	mitochondrion	81.07	69.72
HORVU5Hr1G041750.1	Barley	cytosol	53.55	50.99
GSMUA_Achr6P00410_001	Banana	mitochondrion	52.07	50.0
VIT_10s0116g00090.t01	Wine grape	mitochondrion	33.43	44.31
KRH20872	Soybean	mitochondrion	22.78	43.75
KRH11411	Soybean	nucleus	47.63	41.49
VIT_10s0116g00030.t01	Wine grape	plastid	46.45	39.65
CDY25328	Canola	mitochondrion, plastid	45.86	37.99
Bra028380.1-P	Field mustard	mitochondrion	45.56	37.75
Solyc10g005280.1.1	Tomato	mitochondrion	44.67	37.56
PGSC0003DMT400029367	Potato	mitochondrion	44.67	37.56
AT1G61870.1	Thale cress	mitochondrion	45.27	37.5
CDY47165	Canola	mitochondrion	45.27	37.5
KRH20873	Soybean	cytosol, mitochondrion	13.91	37.01
AT1G11630.1	Thale cress	mitochondrion	42.6	35.56
CDY49792	Canola	plastid	41.42	34.31
CDX97972	Canola	cytosol	27.51	33.33
Bra019842.1-P	Field mustard	cytosol	27.51	33.33
CDY07260	Canola	cytosol	14.5	32.03
TraesCS6D01G401100.1	Wheat	mitochondrion	28.11	22.46
TraesCS6D01G214000.1	Wheat	mitochondrion	29.29	21.43
TraesCS3D01G325200.1	Wheat	plastid	25.74	19.38
TraesCS7D01G240000.1	Wheat	endoplasmic reticulum, plastid	23.37	17.75
TraesCS3D01G317700.1	Wheat	plastid	24.56	17.58
TraesCS3D01G317800.1	Wheat	plastid	22.78	15.31

Protein Annotations

EnsemblPlants:TraesCS3D01G319900.1	EnsemblPlantsGene:TraesCS3D01G319900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF579
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr3D:+:433421376..433422548

Molecular Weight (calculated)

37038.6 Da

IEP (calculated)

9.218

GRAVY (calculated)

-0.150

Length

338 amino acids

Sequence
(BLAST)

001: MAAAVRLFLR RRLATATATP PTPASILNPS SPTTPLTSRQ KTRLAISLLK SSPPPPHDQI LSICRAAALS PKTHLDRVAL SLATSRLSTA PDSLRDLTSS
101: LLIPHHAHHA IVLFGQAGLL PDAISTFQSS PSTRSLNALL FACIVAGNHA EAARIFQTFP DAHRVKPNAE TFNSIIKSFS ESGTTRSFYS VFDEMCKEGV
201: KPTATTFTAA IAGFYKEERF DDVEKVIKLM KKHGCGDLEE AKRLYKEMGK KGLVGDSGFY FTVIFHLCKA GDFDTALGVY NEIIPRNWVP CFSTMKMLVN
301: GLAGSSRIDE AKGIIEKMKE KFPDRDEGWK EVEEALPQ

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.