Factsheet for Os01t0793200-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01589	Sorghum	mitochondrion	85.38	84.95
TraesCS3D01G319900.1	Wheat	mitochondrion	73.08	84.32
TraesCS3A01G326500.1	Wheat	mitochondrion	84.1	84.1
TraesCS3B01G355800.1	Wheat	mitochondrion	84.1	84.1
Zm00001d043225_P001	Maize	mitochondrion	83.59	82.95
HORVU3Hr1G077780.1	Barley	mitochondrion	82.31	82.31
GSMUA_Achr6P00410_001	Banana	mitochondrion	54.62	60.51
HORVU5Hr1G041750.1	Barley	cytosol	51.03	56.06
KRH11411	Soybean	nucleus	50.0	50.26
CDY07260	Canola	cytosol	19.23	49.02
VIT_10s0116g00030.t01	Wine grape	plastid	48.21	47.47
PGSC0003DMT400029367	Potato	mitochondrion	48.46	47.01
Solyc10g005280.1.1	Tomato	mitochondrion	48.21	46.77
VIT_10s0116g00090.t01	Wine grape	mitochondrion	30.51	46.67
CDY25328	Canola	mitochondrion, plastid	48.46	46.32
CDY47165	Canola	mitochondrion	48.21	46.08
Bra028380.1-P	Field mustard	mitochondrion	48.21	46.08
AT1G61870.1	Thale cress	mitochondrion	47.95	45.83
KRH20872	Soybean	mitochondrion	20.26	44.89
CDX97972	Canola	cytosol	29.74	41.58
Bra019842.1-P	Field mustard	cytosol	29.74	41.58
AT1G11630.1	Thale cress	mitochondrion	43.08	41.48
CDY49792	Canola	plastid	42.31	40.44
KRH20873	Soybean	cytosol, mitochondrion	12.56	38.58
Os02t0829800-01	Rice	mitochondrion	28.46	26.24
Os01t0785700-01	Rice	mitochondrion	27.18	24.42
Os02t0633200-01	Rice	mitochondrion	28.46	24.4
Os10t0484900-00	Rice	mitochondrion	25.13	22.9
Os08t0499800-01	Rice	mitochondrion	24.87	21.9
Os10t0485000-01	Rice	cytosol	19.49	7.05

Protein Annotations

Gene3D:1.25.40.10	MapMan:17.7.1.3.2	EntrezGene:4324129	EMBL:AK071275	ProteinID:BAB89045.1	ProteinID:BAB89782.1
ProteinID:BAS74726.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os01g0793200	EnsemblPlants:Os01t0793200-01
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF579
InterPro:Pentatricopeptide_repeat	UniProt:Q8RUB8	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000009C92B
RefSeq:XP_015635951.1	RefSeq:XP_015636029.1	RefSeq:XP_015636104.1	SEG:seg	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os01t0793200-01);Pentatricopeptide repeat domain containing protein. (Os01t0793200-02)

Coordinates

chr1:+:33593744..33597017

Molecular Weight (calculated)

42238.9 Da

IEP (calculated)

9.297

GRAVY (calculated)

-0.172

Length

390 amino acids

Sequence
(BLAST)

001: MAAAVRRLLR RGLSTATAPP PTPGSILNPS SPSTPLTSRQ KSRLAISLLK STPPPPPDQI LSICRAAALS PDSHLDRVAL SLAASKLSSA PDSVRDLASS
101: LLTPHHAPHA IALFGQAGLL PDAVSTFKSS PSTRSLNALL FACLVSGNHA EAARVFQTFP DAYSVKPNTD TFNAIIKSFA ESGTTRSFYS VLDEMCQKGV
201: KPNATTFTTA IAGFYKEERF DDVGKVIELM KKHGCGESLP VFNVRVQGLC KLGRSGDAKA LLNEMVKKGT KPSWLTYNHL IHGFCKEGDL EEAKRLYKEM
301: AKKGLVGDSS FYYMLIYYLC KGGDFDTAVG VYNEIAARNW VPCFSTMKML VNGLAGSSRV DEAKGIIEKM KEKFPDKAEG WKEVEDALPQ

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.