Factsheet for VIT_10s0116g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0116g00030.t01	Wine grape	plastid	96.47	62.12
KRH20872	Soybean	mitochondrion	41.18	59.66
PGSC0003DMT400029367	Potato	mitochondrion	63.53	40.3
Solyc10g005280.1.1	Tomato	mitochondrion	63.53	40.3
KRH11411	Soybean	nucleus	59.22	38.92
Bra028380.1-P	Field mustard	mitochondrion	57.25	35.78
CDY25328	Canola	mitochondrion, plastid	57.25	35.78
CDY47165	Canola	mitochondrion	56.86	35.54
AT1G61870.1	Thale cress	mitochondrion	56.47	35.29
TraesCS3D01G319900.1	Wheat	mitochondrion	44.31	33.43
GSMUA_Achr6P00410_001	Banana	mitochondrion	44.71	32.39
AT1G11630.1	Thale cress	mitochondrion	49.8	31.36
Os01t0793200-01	Rice	mitochondrion	46.67	30.51
CDY49792	Canola	plastid	47.45	29.66
EES01589	Sorghum	mitochondrion	45.1	29.34
TraesCS3B01G355800.1	Wheat	mitochondrion	44.71	29.23
HORVU3Hr1G077780.1	Barley	mitochondrion	44.71	29.23
TraesCS3A01G326500.1	Wheat	mitochondrion	44.71	29.23
Zm00001d043225_P001	Maize	mitochondrion	43.14	27.99
VIT_00s0271g00050.t01	Wine grape	mitochondrion	22.75	25.55
CDX97972	Canola	cytosol	25.49	23.3
Bra019842.1-P	Field mustard	cytosol	25.49	23.3
HORVU5Hr1G041750.1	Barley	cytosol	31.76	22.82
VIT_04s0023g01460.t01	Wine grape	mitochondrion	30.98	19.08
VIT_00s0271g00080.t01	Wine grape	mitochondrion	27.06	19.01
VIT_09s0002g06540.t01	Wine grape	mitochondrion	30.59	18.48
VIT_00s0274g00040.t01	Wine grape	mitochondrion	26.67	17.8
VIT_00s0271g00070.t01	Wine grape	mitochondrion	25.88	17.41
VIT_01s0010g01460.t01	Wine grape	mitochondrion	26.27	17.36
CDY07260	Canola	cytosol	8.24	13.73
GSMUA_Achr11P...	Banana	cytosol	9.41	12.31
VIT_00s0271g00040.t01	Wine grape	cytosol	9.02	11.27
KRH20873	Soybean	cytosol, mitochondrion	2.35	4.72

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ProteinID:CCB57251	ProteinID:CCB57251.1	UniProt:F6HRE3	EMBL:FN596012
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF579	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002108B73	ArrayExpress:VIT_10s0116g00090	EnsemblPlantsGene:VIT_10s0116g00090	EnsemblPlants:VIT_10s0116g00090.t01	RefSeq:XP_003634853
RefSeq:XP_003634853.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10_random:+:39850..40672

Molecular Weight (calculated)

28478.3 Da

IEP (calculated)

8.312

GRAVY (calculated)

-0.125

Length

255 amino acids

Sequence
(BLAST)

001: MAFLSRLRPI YSHRCRFFSS ILSPDSATPL SSKEKSRAAL SLLKSEQDPQ RILEICRAAA LTPESHLDRV AFSVAISKLA DSKHFDSIRH FLDELKARPD
101: LRTERFVSHA IVLFGQAGML NDAVRTFEQM HQLGVDRTVR SLNALLFSCI LAKNYKEANR IFLEFPKTYG IELNLDSYNT VLKAFSESGS SSSGYSILAE
201: MGRKGVKPNA TSFGILLAGF YNEEKYEDVG XVLKMMEEYK CSQGLVLTTL DSELV

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.