Factsheet for Solyc10g005280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029367	Potato	mitochondrion	97.51	97.51
VIT_10s0116g00030.t01	Wine grape	plastid	65.92	66.92
VIT_10s0116g00090.t01	Wine grape	mitochondrion	40.3	63.53
KRH11411	Soybean	nucleus	57.96	60.05
AT1G61870.1	Thale cress	mitochondrion	59.95	59.07
CDY25328	Canola	mitochondrion, plastid	59.2	58.33
CDY07260	Canola	cytosol	22.14	58.17
CDY47165	Canola	mitochondrion	58.71	57.84
Bra028380.1-P	Field mustard	mitochondrion	58.46	57.6
KRH20872	Soybean	mitochondrion	24.38	55.68
GSMUA_Achr6P00410_001	Banana	mitochondrion	47.51	54.26
GSMUA_Achr11P...	Banana	cytosol	25.87	53.33
Bra019842.1-P	Field mustard	cytosol	35.82	51.61
CDX97972	Canola	cytosol	35.57	51.25
AT1G11630.1	Thale cress	mitochondrion	50.25	49.88
Os01t0793200-01	Rice	mitochondrion	46.77	48.21
CDY49792	Canola	plastid	48.51	47.79
EES01589	Sorghum	mitochondrion	46.52	47.7
Zm00001d043225_P001	Maize	mitochondrion	46.02	47.07
KRH20873	Soybean	cytosol, mitochondrion	14.68	46.46
TraesCS3B01G355800.1	Wheat	mitochondrion	44.03	45.38
TraesCS3A01G326500.1	Wheat	mitochondrion	43.78	45.13
HORVU3Hr1G077780.1	Barley	mitochondrion	43.53	44.87
TraesCS3D01G319900.1	Wheat	mitochondrion	37.56	44.67
HORVU5Hr1G041750.1	Barley	cytosol	27.11	30.7
Solyc02g062910.1.1	Tomato	plastid	28.61	27.64
Solyc03g031460.1.1	Tomato	plastid	25.37	26.91
Solyc02g085550.1.1	Tomato	plastid	15.17	24.9
Solyc02g079820.2.1	Tomato	cytosol, plastid	18.66	23.96
Solyc02g079830.1.1	Tomato	mitochondrion	23.38	23.5
Solyc05g012250.1.1	Tomato	mitochondrion	25.62	20.0
Solyc02g085650.2.1	Tomato	plastid	28.11	17.49

Protein Annotations

Gene3D:1.25.40.10	MapMan:17.7.1.3.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	UniProt:K4CX61	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF579	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc10g005280.1	EnsemblPlants:Solyc10g005280.1.1	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276C55D	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:+:213419..214627

Molecular Weight (calculated)

45388.0 Da

IEP (calculated)

9.197

GRAVY (calculated)

-0.314

Length

402 amino acids

Sequence
(BLAST)

001: MAALRSKLRF ITSQHHHHLR RYSAASILNP DSKSPLSGKD KSRAALTLLK SETDPQRILD ICRAAALTPE SHLDRIAYSK AISKLKDLNH FSGIRSFLQE
101: STTRPDLKSE RFISHFIVLY GQAGLLDEAK RTFEEMEKMG IQRTERTLNA LLFACVLAKN YAEMKRVFVE YPKKYGFVPN LDTYNVVIKG FCESGSASSV
201: YSILDEMKRN NVKPNAESFG NCISGFYKEE KYEDVGKMLE MMKGYKMVTG ISTYNVRIQS LCKLKKSAEA KALLDGILSR GLKANCVTYG HLILGFCKEG
301: KLEEAKSMFQ KMVHSGLKPD AECYFTLVYY LCQGGDFEAA LEMYKKCLAD GWVPNFSSMK SLVEGLASIS KVDEAREVIA QVKEKISRNV EKWNDIEEAL
401: PK

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.