Factsheet for TraesCS3A01G326500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G319900.1	Wheat	mitochondrion	85.64	98.82
TraesCS3B01G355800.1	Wheat	mitochondrion	98.46	98.46
HORVU3Hr1G077780.1	Barley	mitochondrion	96.15	96.15
Os01t0793200-01	Rice	mitochondrion	84.1	84.1
EES01589	Sorghum	mitochondrion	82.56	82.14
Zm00001d043225_P001	Maize	mitochondrion	81.54	80.92
HORVU5Hr1G041750.1	Barley	cytosol	59.49	65.35
GSMUA_Achr6P00410_001	Banana	mitochondrion	53.59	59.38
KRH11411	Soybean	nucleus	48.97	49.23
CDY07260	Canola	cytosol	18.97	48.37
VIT_10s0116g00030.t01	Wine grape	plastid	47.18	46.46
CDY25328	Canola	mitochondrion, plastid	47.18	45.1
Bra028380.1-P	Field mustard	mitochondrion	46.92	44.85
VIT_10s0116g00090.t01	Wine grape	mitochondrion	29.23	44.71
CDY47165	Canola	mitochondrion	46.67	44.61
AT1G61870.1	Thale cress	mitochondrion	46.41	44.36
PGSC0003DMT400029367	Potato	mitochondrion	45.13	43.78
Solyc10g005280.1.1	Tomato	mitochondrion	45.13	43.78
KRH20872	Soybean	mitochondrion	19.74	43.75
CDX97972	Canola	cytosol	29.74	41.58
Bra019842.1-P	Field mustard	cytosol	29.74	41.58
AT1G11630.1	Thale cress	mitochondrion	42.56	40.99
CDY49792	Canola	plastid	41.79	39.95
KRH20873	Soybean	cytosol, mitochondrion	12.82	39.37
TraesCS1A01G160400.1	Wheat	cytosol	14.62	26.03
TraesCS3A01G324300.1	Wheat	plastid	27.44	24.77
TraesCS6A01G221200.1	Wheat	mitochondrion	28.97	24.46
TraesCS3A01G331700.1	Wheat	plastid	25.9	23.65
TraesCS3A01G331600.1	Wheat	plastid	27.44	23.31
TraesCS3A01G324200.1	Wheat	plastid	27.18	23.3
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	22.56	22.74
TraesCS3A01G324500.1	Wheat	plastid	26.67	21.99
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	24.87	21.65

Protein Annotations

EnsemblPlants:TraesCS3A01G326500.1	EnsemblPlantsGene:TraesCS3A01G326500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF579
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:17.7.1.3.2	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:571796008..571797180

Molecular Weight (calculated)

42753.6 Da

IEP (calculated)

9.711

GRAVY (calculated)

-0.184

Length

390 amino acids

Sequence
(BLAST)

001: MAAAVRLFLR RRLATATATP PTPASILNPS SPTTPLTSRQ KTRLAISLLK SSPPPPPDQI LSICRAAALS PKTHLDRVAL SLATSRLSTA PDSLRDLTSS
101: LLIPHHAHHA IVLFGQAGLL PDAISTFQSS PSTRSLNALL FACIVAGNHT EAARIFQTFP DAHRVKPNAE TFNSIIKSFS ESGTTRSFYS VFDEMCKQGV
201: KPTATTFTAA IAGFYKEERF DDVEKVIKLM KKHGCGESLQ VYNARVQGLC KLGRNGDAKA LLSEMAKKGT KPNWVTYNHL IYGFCKEGDL EEAKRLYKEM
301: GKKGLVGDSG FYFTVIFHLC KAGDFDTALG VYNEIIPRNW VPCFSTMKML VNGLAGSSRI DEAKGIIEKM KEKFPDRDEG WKEVEAALPQ

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.