Factsheet for TraesCS6A01G221200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G214000.1	Wheat	mitochondrion	98.92	98.92
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	81.39	97.16
TraesCS6B01G260000.1	Wheat	mitochondrion	96.75	96.75
HORVU6Hr1G059290.1	Barley	cytosol	94.16	90.44
Os02t0633200-01	Rice	mitochondrion	69.91	70.99
Zm00001d017317_P001	Maize	mitochondrion	68.4	67.09
EES05467	Sorghum	mitochondrion	66.67	65.81
GSMUA_Achr1P01950_001	Banana	mitochondrion	35.71	42.75
PGSC0003DMT400090439	Potato	plastid	33.12	37.68
VIT_04s0023g01460.t01	Wine grape	mitochondrion	33.77	37.68
AT2G18520.1	Thale cress	mitochondrion	33.77	37.32
CDY35471	Canola	mitochondrion	32.47	36.85
Bra037216.1-P	Field mustard	mitochondrion	33.33	36.75
Bra010568.1-P	Field mustard	mitochondrion	32.25	36.61
CDY67618	Canola	mitochondrion	33.12	36.52
CDY66741	Canola	mitochondrion	33.12	36.52
AT4G36680.1	Thale cress	mitochondrion	32.47	36.41
CDY24774	Canola	mitochondrion	32.03	36.36
Solyc02g062910.1.1	Tomato	plastid	32.47	36.06
PGSC0003DMT400039992	Potato	cytosol	31.17	35.04
Solyc02g085550.1.1	Tomato	plastid	16.67	31.43
TraesCS3A01G326500.1	Wheat	mitochondrion	24.46	28.97
TraesCS1A01G160400.1	Wheat	cytosol	12.55	26.48
Solyc02g085650.2.1	Tomato	plastid	35.28	25.23
TraesCS3A01G324200.1	Wheat	plastid	24.03	24.4
TraesCS3A01G324300.1	Wheat	plastid	22.29	23.84
TraesCS3A01G324500.1	Wheat	plastid	24.24	23.68
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	22.29	22.99
TraesCS3A01G331700.1	Wheat	plastid	21.0	22.72
TraesCS3A01G331600.1	Wheat	plastid	21.86	22.0

Protein Annotations

EnsemblPlants:TraesCS6A01G221200.1	EnsemblPlantsGene:TraesCS6A01G221200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1042
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:410893600..410894988

Molecular Weight (calculated)

50369.1 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.335

Length

462 amino acids

Sequence
(BLAST)

001: MAALASLLRR RSGRRADVLL RTLCATATAP PLTSSAAKTR LRREYDADRA VSLLEAIDTA SLSAGSTRHA LSLAARRLTR AGRHADAEAL LSSHIPASPT
101: EPHLSAILCS YASAGLPEKA LEAFRSAAPS LPSPISPMPF NALLSAFVRC RRHRRVPVLF EELSKEFSIT PNAISYAILV KAHCMVRHDA KAHEVIARMR
201: EEGISPTTTI YTTMIDSMYK QKKVEEAQTL WKQMLESGCK PDHATYNVKA MHHGLNGKPE GVLQVMAEME AAGVKPDTIT YNFLMTAYCK DGKMEDAKAL
301: YRSLGDKGCS ANAATYKHML AALFAHGDFD TALEIFRESM SKHKVPDFKT MKGFVEGLAK GGRVAEAKEV IYMVMKKFPD TMLSGWKKLE KELGFCSDNG
401: DTTPHAECTA EEPVSEAEPA TTEALELKDS AAEETGVSEE SDDDETPSPE TSTDEEVPRG PA

Best Arabidopsis Sequence Match ( AT2G18520.1 )
(BLAST)

001: MTSSRLYLRF LRRFSTATGI DSQTTAYPGA ITMSKAKSKL RKVQDPDKAL AIYKSVSNNS TSPLSSRYAM ELTVQRLAKS QRFSDIEALI ESHKNNPKIK
101: TETFLSTLIR SYGRASMFDH AMKMFEEMDK LGTPRTVVSF NALLAACLHS DLFERVPQLF DEFPQRYNNI TPDKISYGML IKSYCDSGKP EKAMEIMRDM
201: EVKGVEVTII AFTTILGSLY KNGLVDEAES LWIEMVNKGC DLDNTVYNVR LMNAAKESPE RVKELMEEMS SVGLKPDTVS YNYLMTAYCV KGMMSEAKKV
301: YEGLEQPNAA TFRTLIFHLC INGLYDQGLT VFKKSAIVHK IPDFKTCKHL TEGLVKNNRM EDARGVARIV KKKFPPRLVT EWKKLEEKLG LYSKGNAAAV
401: SSSSQTREVL DQEREDDV

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18520, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU67]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.