Factsheet for Bra010568.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009783.1-P
Bra020466.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36680.1	Bra009783.1-P	AT5G24660.1	21798944
AT4G36680.1	Bra020466.1-P	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24774	Canola	mitochondrion	97.79	97.79
AT4G36680.1	Thale cress	mitochondrion	77.64	76.7
Bra037216.1-P	Field mustard	mitochondrion	65.36	63.48
PGSC0003DMT400090439	Potato	plastid	57.25	57.39
VIT_04s0023g01460.t01	Wine grape	mitochondrion	56.51	55.56
PGSC0003DMT400039992	Potato	cytosol	55.53	54.99
Solyc02g062910.1.1	Tomato	plastid	55.77	54.57
Solyc02g085550.1.1	Tomato	plastid	31.2	51.84
GSMUA_Achr1P01950_001	Banana	mitochondrion	39.31	41.45
Solyc02g085650.2.1	Tomato	plastid	57.25	36.07
Os02t0633200-01	Rice	mitochondrion	38.57	34.51
Zm00001d017317_P001	Maize	mitochondrion	37.59	32.48
TraesCS6A01G221200.1	Wheat	mitochondrion	36.61	32.25
TraesCS6D01G214000.1	Wheat	mitochondrion	36.61	32.25
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	30.47	32.04
TraesCS6B01G260000.1	Wheat	mitochondrion	36.36	32.03
HORVU6Hr1G059290.1	Barley	cytosol	36.61	30.98
EES05467	Sorghum	mitochondrion	35.38	30.77
Bra039373.1-P	Field mustard	cytosol	19.9	29.56
Bra003553.1-P	Field mustard	mitochondrion	27.27	28.39
Bra008492.1-P	Field mustard	mitochondrion	27.27	28.32
Bra028380.1-P	Field mustard	mitochondrion	28.26	28.19
Bra019842.1-P	Field mustard	cytosol	19.16	27.96
Bra001492.1-P	Field mustard	mitochondrion	27.27	27.75
Bra037096.1-P	Field mustard	mitochondrion	26.54	27.2
Bra039372.1-P	Field mustard	cytosol, plastid	25.06	21.34

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra010568	EnsemblPlants:Bra010568.1	EnsemblPlants:Bra010568.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885	InterPro:IPR011990
UniProt:M4D268	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF506	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002546010
SEG:seg	:	:	:	:	:

Description

AT4G36680 (E=1e-171) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA08:-:15232085..15233308

Molecular Weight (calculated)

45949.3 Da

IEP (calculated)

9.410

GRAVY (calculated)

-0.446

Length

407 amino acids

Sequence
(BLAST)

001: MAASRLSLRH LRRFTTTTGD AATTVLESTK ISASKAKSIL RKQHDPDKAL EIYSNVSNHS ASPVSSRYAQ ELTVRRLAKC NRFSDIEALI ESHKDDPRIK
101: EEPFYSTLIR SYGRASMLDH AVKAFEEMGR HETPRTAVSF NALLTACLNS QNFEKVPQLF DEMPQRYSTI VPDRVSYGIL IKSYCDAGSP EKAIEIMREM
201: EGKRNMEVTT IAFTTILGSL YKNGKVELAE SLWNEMVKKG IEFDSAAYNV RLMNAQKEGP ERVWELIEEM SVKGLKPDTI SYNYLMTAYC EKGMLDEAKK
301: VFEGLKRNRC APNAATFRTL VFHLCDSGLY EQGYAIFKKS VGMNKIPDFN TLQHLAVGLV RNKKVNDAKG LIRTVKKKFP PSFLNAWKKL EEELGLDTKP
401: DAPSTPA

Best Arabidopsis Sequence Match ( AT4G36680.1 )
(BLAST)

001: MASSRISLRL VRRFASAAAD GTTTAPSSGK ISVSKAKSTL RKEHDPDKAL KIYANVSDHS ASPVSSRYAQ ELTVRRLAKC RRFSDIETLI ESHKNDPKIK
101: EEPFYSTLIR SYGQASMFNH AMRTFEQMDQ YGTPRSAVSF NALLNACLHS KNFDKVPQLF DEIPQRYNKI IPDKISYGIL IKSYCDSGTP EKAIEIMRQM
201: QGKGMEVTTI AFTTILSSLY KKGELEVADN LWNEMVKKGC ELDNAAYNVR IMSAQKESPE RVKELIEEMS SMGLKPDTIS YNYLMTAYCE RGMLDEAKKV
301: YEGLEGNNCA PNAATFRTLI FHLCYSRLYE QGYAIFKKSV YMHKIPDFNT LKHLVVGLVE NKKRDDAKGL IRTVKKKFPP SFLNAWKKLE EELGLYSKTD
401: AFPSSAKEAA AA

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g36680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M065]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.