Factsheet for Solyc02g085650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36680.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT4G36680.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT4G36680.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT4G36680.1	Solyc06g072990.1.1	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090439	Potato	plastid	59.29	94.33
Solyc02g085550.1.1	Tomato	plastid	32.82	86.53
Solyc02g062910.1.1	Tomato	plastid	48.76	75.72
VIT_04s0023g01460.t01	Wine grape	mitochondrion	41.64	64.98
AT4G36680.1	Thale cress	mitochondrion	37.62	58.98
CDY24774	Canola	mitochondrion	36.22	57.49
Bra010568.1-P	Field mustard	mitochondrion	36.07	57.25
CDY35471	Canola	mitochondrion	35.6	56.51
AT2G18520.1	Thale cress	mitochondrion	36.07	55.74
Bra037216.1-P	Field mustard	mitochondrion	35.14	54.18
CDY67618	Canola	mitochondrion	34.98	53.94
CDY66741	Canola	mitochondrion	34.37	52.98
GSMUA_Achr1P01950_001	Banana	mitochondrion	27.09	45.34
Os02t0633200-01	Rice	mitochondrion	25.54	36.26
TraesCS6A01G221200.1	Wheat	mitochondrion	25.23	35.28
TraesCS6D01G214000.1	Wheat	mitochondrion	25.08	35.06
TraesCS6B01G260000.1	Wheat	mitochondrion	25.08	35.06
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	20.9	34.88
Zm00001d017317_P001	Maize	mitochondrion	25.23	34.61
HORVU6Hr1G059290.1	Barley	cytosol	25.54	34.3
EES05467	Sorghum	mitochondrion	24.15	33.33
Solyc03g031460.1.1	Tomato	plastid	18.11	30.87
Solyc10g005280.1.1	Tomato	mitochondrion	17.49	28.11
Solyc02g079830.1.1	Tomato	mitochondrion	16.72	27.0
Solyc02g079820.2.1	Tomato	cytosol, plastid	12.07	24.92
Solyc05g012250.1.1	Tomato	mitochondrion	18.42	23.11

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.90.230.10	MapMan:50.3.4	InterPro:Creatinase/aminopeptidase-like	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0046872	GO:GO:0080156
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4BB76	PFAM:PF00557	PFAM:PF01535
PFAM:PF13041	PFAM:PF16188	ScanProsite:PS00491	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF506
InterPro:Pentatricopeptide_repeat	InterPro:Pept_M24	InterPro:Peptidase_M24B_aminopep-P_CS	InterPro:Peptidase_M24_C	SUPFAM:SSF55920	EnsemblPlantsGene:Solyc02g085650.2
EnsemblPlants:Solyc02g085650.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002769232	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:48483721..48489572

Molecular Weight (calculated)

72456.7 Da

IEP (calculated)

7.369

GRAVY (calculated)

-0.377

Length

646 amino acids

Sequence
(BLAST)

001: MSSSIALRQA RHLTTTAAAV AAASSPSTIT ISISKAKSKL KAEHDPDKAL EIYSSVSDRY VSPLSSRYAQ EFTVKRLAKS HRFSDIENFL ESHKNSPKIT
101: QEPFLSSIIR SYGVAGMFDH ALKIYHQMDD LGTPRSAISF NVLLSACVRS KLYDRVPQLF DEIPVKYGFL PDKVSYGILI RSYCETGSPE MAMEILKVME
201: EKSVEITTVT FTTILHSFYK KGKSDEAEKV WNEMVNRGCG PDVGAYNVKI MNIQGGDLEG VKALIEEMND AGLKPDTISY NYLMTCYCKN ELMDEAQMVY
301: DDLEKNGCNP NAATFRTLIF YLCKKGRYET GYKVFKESVK VQKIPDFDTL TYLVEGLVKK SKLKDAKGMS RTVKKKFPPN LVKAWTKLEK ELGLAKAEMQ
401: EIYGASGYFM EAESTKQKKQ LGTKRLTEVS VSDKLEESRA SKEHFRGLSF PTTSSVGSNA AIIHYKPEAE TCAELDPDCI YLFDSGAQVL KGRISLGIAR
501: SPNGTNDGLD YMHGTGHGIG SYLNVHEGPH NISFRPSARD VTLQVSMAVT DEPGYYEDGN FGIRIENVLI VKEGNTKFNF GNKGYLSFEH ITWAPYQRKL
601: IDVNLLIPEE IEWLNEYHAK CREILTPYLN TSEMEWLKKA TEPIAA

Best Arabidopsis Sequence Match ( AT4G36680.1 )
(BLAST)

001: MASSRISLRL VRRFASAAAD GTTTAPSSGK ISVSKAKSTL RKEHDPDKAL KIYANVSDHS ASPVSSRYAQ ELTVRRLAKC RRFSDIETLI ESHKNDPKIK
101: EEPFYSTLIR SYGQASMFNH AMRTFEQMDQ YGTPRSAVSF NALLNACLHS KNFDKVPQLF DEIPQRYNKI IPDKISYGIL IKSYCDSGTP EKAIEIMRQM
201: QGKGMEVTTI AFTTILSSLY KKGELEVADN LWNEMVKKGC ELDNAAYNVR IMSAQKESPE RVKELIEEMS SMGLKPDTIS YNYLMTAYCE RGMLDEAKKV
301: YEGLEGNNCA PNAATFRTLI FHLCYSRLYE QGYAIFKKSV YMHKIPDFNT LKHLVVGLVE NKKRDDAKGL IRTVKKKFPP SFLNAWKKLE EELGLYSKTD
401: AFPSSAKEAA AA

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g36680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M065]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.